Literature DB >> 23430741

Design of an Escherichia coli expressed HIV-1 gp120 fragment immunogen that binds to b12 and induces broad and potent neutralizing antibodies.

Sanchari Bhattacharyya1, Pranveer Singh, Ujjwal Rathore, Mansi Purwar, Denise Wagner, Heather Arendt, Joanne DeStefano, Celia C LaBranche, David C Montefiori, Sanjay Phogat, Raghavan Varadarajan.   

Abstract

b12, one of the few broadly neutralizing antibodies against HIV-1, binds to the CD4 binding site (CD4bs) on the gp120 subunit of HIV-1 Env. Two small fragments of HIV-1 gp120, b121a and b122a, which display about 70% of the b12 epitope and include solubility-enhancing mutations, were designed. Bacterially expressed b121a/b122a were partially folded and could bind b12 but not the CD4bs-directed non-neutralizing antibody b6. Sera from rabbits primed with b121a or b122a protein fragments and boosted with full-length gp120 showed broad neutralizing activity in a TZM-bl assay against a 16-virus panel that included nine Tier 2 and 3 viruses as well as in a five-virus panel previously designed to screen for broad neutralization. Using a mean IC50 cut-off of 50, sera from control rabbits immunized with gp120 alone neutralized only one virus of the 14 non-Tier 1 viruses tested (7%), whereas sera from b121a- and b122a-immunized rabbits neutralized seven (50%) and twelve (86%) viruses, respectively. Serum depletion studies confirmed that neutralization was gp120-directed and that sera from animals immunized with gp120 contained lower amounts of CD4bs-directed antibodies than corresponding sera from animals immunized with b121a/b122a. Competition binding assays with b12 also showed that b121a/2a sera contained significantly higher amounts of antibodies directed toward the CD4 binding site than the gp120 sera. The data demonstrate that it is possible to elicit broadly neutralizing sera against HIV-1 in small animals.

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Year:  2013        PMID: 23430741      PMCID: PMC3617282          DOI: 10.1074/jbc.M112.425959

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  62 in total

1.  Design of a non-glycosylated outer domain-derived HIV-1 gp120 immunogen that binds to CD4 and induces neutralizing antibodies.

Authors:  Sanchari Bhattacharyya; Roshan Elizabeth Rajan; Yalla Swarupa; Ujjwal Rathore; Anjali Verma; Ranga Udaykumar; Raghavan Varadarajan
Journal:  J Biol Chem       Date:  2010-06-17       Impact factor: 5.157

2.  Building on the past to define an efficient path to an HIV vaccine.

Authors:  Bette Korber
Journal:  Expert Rev Vaccines       Date:  2011-07       Impact factor: 5.217

3.  Design of an HA2-based Escherichia coli expressed influenza immunogen that protects mice from pathogenic challenge.

Authors:  Gayathri Bommakanti; Michael P Citron; Robert W Hepler; Cheryl Callahan; Gwendolyn J Heidecker; Tariq Ahmad Najar; Xianghan Lu; Joseph G Joyce; John W Shiver; Danilo R Casimiro; Jan ter Meulen; Xiaoping Liang; Raghavan Varadarajan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-06       Impact factor: 11.205

4.  Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01.

Authors:  Tongqing Zhou; Ivelin Georgiev; Xueling Wu; Zhi-Yong Yang; Kaifan Dai; Andrés Finzi; Young Do Kwon; Johannes F Scheid; Wei Shi; Ling Xu; Yongping Yang; Jiang Zhu; Michel C Nussenzweig; Joseph Sodroski; Lawrence Shapiro; Gary J Nabel; John R Mascola; Peter D Kwong
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

5.  Design and characterization of stabilized derivatives of human CD4D12 and CD4D1.

Authors:  Piyali Saha; Bipasha Barua; Sanchari Bhattacharyya; M M Balamurali; William R Schief; David Baker; Raghavan Varadarajan
Journal:  Biochemistry       Date:  2011-08-23       Impact factor: 3.162

6.  The neutralization breadth of HIV-1 develops incrementally over four years and is associated with CD4+ T cell decline and high viral load during acute infection.

Authors:  Elin S Gray; Maphuti C Madiga; Tandile Hermanus; Penny L Moore; Constantinos Kurt Wibmer; Nancy L Tumba; Lise Werner; Koleka Mlisana; Sengeziwe Sibeko; Carolyn Williamson; Salim S Abdool Karim; Lynn Morris
Journal:  J Virol       Date:  2011-03-09       Impact factor: 5.103

7.  Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope.

Authors:  Bruno E Correia; Yih-En Andrew Ban; Margaret A Holmes; Hengyu Xu; Katharine Ellingson; Zane Kraft; Chris Carrico; Erica Boni; D Noah Sather; Camille Zenobia; Katherine Y Burke; Tyler Bradley-Hewitt; Jessica F Bruhn-Johannsen; Oleksandr Kalyuzhniy; David Baker; Roland K Strong; Leonidas Stamatatos; William R Schief
Journal:  Structure       Date:  2010-09-08       Impact factor: 5.006

Review 8.  From vaccines to memory and back.

Authors:  Federica Sallusto; Antonio Lanzavecchia; Koichi Araki; Rafi Ahmed
Journal:  Immunity       Date:  2010-10-29       Impact factor: 31.745

9.  Characteristics of the earliest cross-neutralizing antibody response to HIV-1.

Authors:  Iliyana Mikell; D Noah Sather; Spyros A Kalams; Marcus Altfeld; Galit Alter; Leonidas Stamatatos
Journal:  PLoS Pathog       Date:  2011-01-13       Impact factor: 6.823

10.  An efficient algorithmic approach for mass spectrometry-based disulfide connectivity determination using multi-ion analysis.

Authors:  William Murad; Rahul Singh; Ten-Yang Yen
Journal:  BMC Bioinformatics       Date:  2011-02-15       Impact factor: 3.169

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  15 in total

Review 1.  Elicitation of HIV-1-neutralizing antibodies against the CD4-binding site.

Authors:  Ivelin S Georgiev; M Gordon Joyce; Tongqing Zhou; Peter D Kwong
Journal:  Curr Opin HIV AIDS       Date:  2013-09       Impact factor: 4.283

2.  Glycosylation of the core of the HIV-1 envelope subunit protein gp120 is not required for native trimer formation or viral infectivity.

Authors:  Ujjwal Rathore; Piyali Saha; Sannula Kesavardhana; Aditya Arun Kumar; Rohini Datta; Sivasankar Devanarayanan; Raksha Das; John R Mascola; Raghavan Varadarajan
Journal:  J Biol Chem       Date:  2017-04-26       Impact factor: 5.157

Review 3.  Advances in structure-based vaccine design.

Authors:  Daniel W Kulp; William R Schief
Journal:  Curr Opin Virol       Date:  2013-06-25       Impact factor: 7.090

4.  Influenza Hemagglutinin Head Domain Mimicry by Rational Design.

Authors:  V Vamsee Aditya Mallajosyula; Shiv Swaroop; Raghavan Varadarajan
Journal:  Protein J       Date:  2020-10-17       Impact factor: 2.371

5.  Bacterially expressed HIV-1 gp120 outer-domain fragment immunogens with improved stability and affinity for CD4-binding site neutralizing antibodies.

Authors:  Ujjwal Rathore; Mansi Purwar; Venkada Subramanian Vignesh; Raksha Das; Aditya Arun Kumar; Sanchari Bhattacharyya; Heather Arendt; Joanne DeStefano; Aaron Wilson; Christopher Parks; Celia C La Branche; David C Montefiori; Raghavan Varadarajan
Journal:  J Biol Chem       Date:  2018-08-09       Impact factor: 5.157

6.  Structure-based Design of Cyclically Permuted HIV-1 gp120 Trimers That Elicit Neutralizing Antibodies.

Authors:  Sannula Kesavardhana; Raksha Das; Michael Citron; Rohini Datta; Linda Ecto; Nonavinakere Seetharam Srilatha; Daniel DiStefano; Ryan Swoyer; Joseph G Joyce; Somnath Dutta; Celia C LaBranche; David C Montefiori; Jessica A Flynn; Raghavan Varadarajan
Journal:  J Biol Chem       Date:  2016-11-22       Impact factor: 5.157

7.  Influenza hemagglutinin stem-fragment immunogen elicits broadly neutralizing antibodies and confers heterologous protection.

Authors:  Vamsee V A Mallajosyula; Michael Citron; Francesca Ferrara; Xianghan Lu; Cheryl Callahan; Gwendolyn J Heidecker; Siddhartha P Sarma; Jessica A Flynn; Nigel J Temperton; Xiaoping Liang; Raghavan Varadarajan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

8.  A critical question for HIV vaccine development: which antibodies to induce?

Authors:  Susan Zolla-Pazner
Journal:  Science       Date:  2014-07-11       Impact factor: 47.728

9.  Probing the Structure of the HIV-1 Envelope Trimer Using Aspartate Scanning Mutagenesis.

Authors:  Raksha Das; Rohini Datta; Raghavan Varadarajan
Journal:  J Virol       Date:  2020-10-14       Impact factor: 5.103

10.  Hemagglutinin Sequence Conservation Guided Stem Immunogen Design from Influenza A H3 Subtype.

Authors:  V Vamsee Aditya Mallajosyula; Michael Citron; Francesca Ferrara; Nigel J Temperton; Xiaoping Liang; Jessica A Flynn; Raghavan Varadarajan
Journal:  Front Immunol       Date:  2015-06-26       Impact factor: 7.561

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