Literature DB >> 23424580

(1S,3aS,4S,7aS)-Ethyl 1-benzyl-2-(4-meth-oxy-benz-yl)-6,7-dimethyl-3-oxo-2,3,3a,4,5,7a-hexa-hydro-1H-isoindole-4-carboxyl-ate dichloro-methane monosolvate.

Benguo Lin1, Jin-Long Wu.   

Abstract

In the title compound, C(28)H(33)NO(4)·CH(2)Cl(2), the pyrrolidone ring adopts a twisted envelope conformation and the cyclo-hexene has a half-chair conformation. In the crystal, weak C-H⋯O hydrogen bonds link the components into chains along [100].

Entities:  

Year:  2013        PMID: 23424580      PMCID: PMC3569834          DOI: 10.1107/S1600536813002560

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For isoindolin-1-one derivatives in cytochalasins, see: Liu et al. (2006 ▶); Cox et al. (1983 ▶).

Experimental

Crystal data

C28H33NO4·CH2Cl2 M = 532.48 Monoclinic, a = 9.6864 (5) Å b = 15.5706 (8) Å c = 9.7460 (6) Å β = 109.221 (7)° V = 1387.99 (14) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 293 K 0.32 × 0.26 × 0.23 mm

Data collection

Oxford Diffraction Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2011 ▶) T min = 0.919, T max = 0.941 6260 measured reflections 3844 independent reflections 2990 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.127 S = 1.07 3844 reflections 330 parameters 1 restraint H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1789 Friedel pairs Flack parameter: −0.05 (11) Data collection: CrysAlis PRO (Oxford Diffraction, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813002560/cv5380sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002560/cv5380Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813002560/cv5380Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H33NO4·CH2Cl2F(000) = 564
Mr = 532.48Dx = 1.274 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2239 reflections
a = 9.6864 (5) Åθ = 2.9–29.1°
b = 15.5706 (8) ŵ = 0.27 mm1
c = 9.7460 (6) ÅT = 293 K
β = 109.221 (7)°Block, colourless
V = 1387.99 (14) Å30.32 × 0.26 × 0.23 mm
Z = 2
Oxford Diffraction Xcalibur (Atlas, Gemini ultra) diffractometer3844 independent reflections
Radiation source: fine-focus sealed tube2990 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
Detector resolution: 10.3592 pixels mm-1θmax = 25.4°, θmin = 2.9°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2011)k = −18→14
Tmin = 0.919, Tmax = 0.941l = −11→11
6260 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.048w = 1/[σ2(Fo2) + (0.0493P)2 + 0.5082P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.127(Δ/σ)max < 0.001
S = 1.07Δρmax = 0.26 e Å3
3844 reflectionsΔρmin = −0.22 e Å3
330 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0155 (19)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1789 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.05 (11)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.9553 (2)0.0250 (2)1.0097 (3)0.1866 (12)
Cl20.65374 (18)0.04546 (13)0.85047 (17)0.1164 (6)
O11.3771 (3)−0.2369 (2)0.9604 (3)0.0767 (10)
O20.8238 (3)−0.02886 (19)0.3287 (3)0.0632 (8)
O30.5215 (3)0.0189 (2)0.4345 (4)0.0860 (11)
O40.5046 (3)0.0707 (2)0.2171 (3)0.0750 (9)
N11.0380 (3)0.0314 (2)0.4734 (3)0.0468 (7)
C11.5287 (6)−0.2472 (4)1.0238 (6)0.0980 (19)
H1A1.5670−0.27470.95580.147*
H1C1.5490−0.28201.10950.147*
H1B1.5738−0.19201.04950.147*
C21.3277 (4)−0.1863 (3)0.8388 (4)0.0495 (9)
C31.1780 (4)−0.1758 (3)0.7830 (4)0.0560 (10)
H31.1186−0.20160.82910.067*
C41.1162 (4)−0.1279 (3)0.6604 (4)0.0528 (10)
H41.0151−0.12210.62340.063*
C51.2028 (4)−0.0879 (2)0.5907 (4)0.0446 (9)
C61.3511 (4)−0.0988 (3)0.6482 (4)0.0497 (10)
H61.4107−0.07260.60280.060*
C71.4150 (4)−0.1476 (3)0.7712 (4)0.0540 (10)
H71.5160−0.15400.80770.065*
C81.1352 (4)−0.0356 (3)0.4546 (4)0.0524 (10)
H8B1.2124−0.00940.42610.063*
H8A1.0805−0.07360.37680.063*
C91.0877 (4)0.0985 (2)0.5848 (4)0.0464 (9)
H91.10320.07230.68010.056*
C101.2300 (4)0.1407 (3)0.5864 (5)0.0587 (11)
H10B1.26830.17300.67610.070*
H10A1.29980.09560.58880.070*
C111.2230 (4)0.2007 (3)0.4609 (5)0.0541 (10)
C121.1740 (4)0.1739 (3)0.3175 (5)0.0594 (11)
H121.14230.11760.29520.071*
C131.1717 (5)0.2301 (4)0.2072 (6)0.0779 (15)
H131.13890.21090.11160.093*
C141.2158 (5)0.3122 (4)0.2352 (8)0.0866 (17)
H141.21210.34930.15940.104*
C151.2661 (5)0.3406 (3)0.3754 (8)0.0840 (17)
H151.29770.39710.39520.101*
C161.2701 (4)0.2854 (3)0.4887 (6)0.0705 (13)
H161.30460.30530.58390.085*
C170.9501 (4)0.1545 (2)0.5469 (4)0.0426 (9)
H170.94750.18890.46200.051*
C180.8293 (4)0.0886 (2)0.4960 (4)0.0455 (9)
H180.82080.06060.58290.055*
C190.8895 (4)0.0240 (3)0.4187 (4)0.0470 (9)
C200.6846 (4)0.1320 (3)0.4198 (4)0.0515 (10)
H200.69350.16680.33940.062*
C210.6515 (5)0.1908 (3)0.5308 (5)0.0699 (13)
H21B0.58800.23670.47850.084*
H21A0.59750.15800.58090.084*
C220.7822 (5)0.2308 (3)0.6435 (5)0.0604 (11)
C230.9207 (5)0.2151 (3)0.6560 (4)0.0556 (10)
C241.0504 (6)0.2564 (3)0.7643 (5)0.0743 (13)
H24B1.10090.29090.71430.111*
H24C1.11500.21290.81970.111*
H24A1.01850.29210.82840.111*
C250.7356 (6)0.2921 (3)0.7405 (6)0.0922 (18)
H25B0.68670.34060.68450.138*
H25C0.82020.31140.81760.138*
H25A0.67040.26320.78090.138*
C260.5632 (4)0.0670 (3)0.3608 (5)0.0645 (12)
C270.3958 (7)0.0046 (4)0.1472 (7)0.105 (2)
H27B0.4442−0.05020.14910.126*
H27A0.3269−0.00170.19970.126*
C280.3196 (7)0.0291 (5)−0.0004 (7)0.116 (2)
H28C0.38690.0304−0.05390.173*
H28B0.27740.0850−0.00200.173*
H28A0.2436−0.0118−0.04390.173*
C290.7904 (7)0.0628 (5)1.0126 (7)0.124 (2)
H29A0.79830.12391.03320.149*
H29B0.76540.03461.09000.149*
U11U22U33U12U13U23
Cl10.0957 (13)0.250 (3)0.191 (2)−0.0212 (17)0.0151 (13)−0.069 (2)
Cl20.1087 (11)0.1250 (14)0.1006 (11)−0.0138 (10)0.0143 (9)−0.0090 (10)
O10.064 (2)0.099 (3)0.069 (2)0.0249 (18)0.0239 (16)0.0291 (19)
O20.0567 (17)0.0626 (19)0.0627 (18)−0.0058 (15)0.0091 (14)−0.0102 (16)
O30.0700 (19)0.094 (3)0.096 (2)−0.0166 (19)0.0301 (18)0.034 (2)
O40.0652 (18)0.080 (2)0.072 (2)−0.0154 (17)0.0118 (16)0.0209 (17)
N10.0445 (17)0.0443 (19)0.0474 (17)0.0077 (15)0.0093 (13)−0.0010 (15)
C10.079 (4)0.128 (5)0.079 (4)0.039 (3)0.016 (3)0.029 (3)
C20.051 (2)0.048 (2)0.050 (2)0.0079 (19)0.0177 (18)0.0022 (19)
C30.046 (2)0.056 (3)0.072 (3)−0.006 (2)0.027 (2)0.002 (2)
C40.0315 (18)0.053 (3)0.073 (3)−0.0017 (18)0.0157 (19)0.001 (2)
C50.047 (2)0.039 (2)0.047 (2)0.0029 (17)0.0149 (17)−0.0075 (17)
C60.0374 (19)0.054 (2)0.062 (2)−0.0011 (18)0.0232 (18)0.000 (2)
C70.0333 (18)0.063 (3)0.066 (3)0.0107 (19)0.0173 (18)0.001 (2)
C80.053 (2)0.050 (2)0.053 (2)0.009 (2)0.0160 (19)−0.0016 (19)
C90.046 (2)0.049 (2)0.038 (2)0.0094 (18)0.0060 (16)−0.0004 (17)
C100.043 (2)0.062 (3)0.058 (3)0.005 (2)−0.0011 (18)−0.011 (2)
C110.0334 (19)0.054 (3)0.077 (3)0.0040 (18)0.0197 (19)−0.007 (2)
C120.055 (2)0.059 (3)0.067 (3)−0.002 (2)0.025 (2)−0.006 (2)
C130.072 (3)0.082 (4)0.093 (4)0.009 (3)0.045 (3)0.028 (3)
C140.064 (3)0.085 (4)0.134 (5)0.019 (3)0.064 (3)0.038 (4)
C150.059 (3)0.054 (3)0.155 (6)−0.003 (2)0.057 (3)0.007 (4)
C160.048 (3)0.057 (3)0.112 (4)−0.002 (2)0.033 (3)−0.015 (3)
C170.048 (2)0.047 (2)0.0358 (19)0.0074 (17)0.0182 (16)0.0057 (16)
C180.045 (2)0.052 (2)0.0399 (19)0.0053 (18)0.0133 (16)0.0107 (17)
C190.048 (2)0.048 (2)0.0408 (19)0.003 (2)0.0095 (17)0.0096 (19)
C200.043 (2)0.057 (3)0.057 (2)0.0073 (19)0.0209 (19)0.021 (2)
C210.063 (3)0.069 (3)0.092 (3)0.015 (2)0.044 (3)0.021 (3)
C220.081 (3)0.051 (3)0.067 (3)0.018 (2)0.048 (2)0.008 (2)
C230.082 (3)0.044 (2)0.043 (2)0.009 (2)0.023 (2)0.0101 (19)
C240.100 (4)0.064 (3)0.058 (3)0.013 (3)0.023 (3)−0.017 (2)
C250.124 (4)0.080 (4)0.107 (4)0.017 (3)0.084 (4)0.002 (3)
C260.043 (2)0.067 (3)0.084 (3)0.004 (2)0.023 (2)0.029 (3)
C270.102 (4)0.099 (4)0.099 (4)−0.044 (4)0.013 (3)0.021 (3)
C280.104 (4)0.119 (5)0.110 (5)−0.030 (4)0.015 (4)−0.032 (4)
C290.132 (5)0.144 (6)0.085 (4)0.014 (5)0.020 (4)−0.033 (4)
Cl1—C291.712 (7)C13—C141.347 (8)
Cl2—C291.716 (6)C13—H130.9300
O1—C21.372 (5)C14—C151.364 (7)
O1—C11.402 (6)C14—H140.9300
O2—C191.218 (4)C15—C161.389 (7)
O3—C261.197 (5)C15—H150.9300
O4—C261.328 (5)C16—H160.9300
O4—C271.470 (6)C17—C181.511 (5)
N1—C191.364 (4)C17—C231.517 (5)
N1—C81.456 (5)C17—H170.9800
N1—C91.470 (5)C18—C191.486 (5)
C1—H1A0.9600C18—C201.512 (5)
C1—H1C0.9600C18—H180.9800
C1—H1B0.9600C20—C261.513 (6)
C2—C71.371 (5)C20—C211.531 (6)
C2—C31.381 (5)C20—H200.9800
C3—C41.368 (5)C21—C221.510 (7)
C3—H30.9300C21—H21B0.9700
C4—C51.389 (5)C21—H21A0.9700
C4—H40.9300C22—C231.329 (6)
C5—C61.369 (5)C22—C251.513 (6)
C5—C81.509 (5)C23—C241.495 (6)
C6—C71.382 (5)C24—H24B0.9600
C6—H60.9300C24—H24C0.9600
C7—H70.9300C24—H24A0.9600
C8—H8B0.9700C25—H25B0.9600
C8—H8A0.9700C25—H25C0.9600
C9—C101.522 (5)C25—H25A0.9600
C9—C171.532 (5)C27—C281.435 (8)
C9—H90.9800C27—H27B0.9700
C10—C111.522 (6)C27—H27A0.9700
C10—H10B0.9700C28—H28C0.9600
C10—H10A0.9700C28—H28B0.9600
C11—C121.385 (6)C28—H28A0.9600
C11—C161.394 (6)C29—H29A0.9700
C12—C131.380 (6)C29—H29B0.9700
C12—H120.9300
C2—O1—C1117.6 (4)C18—C17—C9102.2 (3)
C26—O4—C27116.8 (4)C23—C17—C9122.3 (3)
C19—N1—C8122.2 (3)C18—C17—H17107.0
C19—N1—C9113.3 (3)C23—C17—H17107.0
C8—N1—C9122.3 (3)C9—C17—H17107.0
O1—C1—H1A109.5C19—C18—C17103.6 (3)
O1—C1—H1C109.5C19—C18—C20120.5 (3)
H1A—C1—H1C109.5C17—C18—C20110.6 (3)
O1—C1—H1B109.5C19—C18—H18107.1
H1A—C1—H1B109.5C17—C18—H18107.1
H1C—C1—H1B109.5C20—C18—H18107.1
C7—C2—O1125.0 (3)O2—C19—N1124.8 (4)
C7—C2—C3119.5 (3)O2—C19—C18128.6 (3)
O1—C2—C3115.5 (3)N1—C19—C18106.5 (3)
C4—C3—C2120.6 (4)C18—C20—C26111.6 (3)
C4—C3—H3119.7C18—C20—C21107.2 (3)
C2—C3—H3119.7C26—C20—C21110.6 (3)
C3—C4—C5120.7 (3)C18—C20—H20109.1
C3—C4—H4119.6C26—C20—H20109.1
C5—C4—H4119.6C21—C20—H20109.1
C6—C5—C4117.7 (3)C22—C21—C20116.1 (3)
C6—C5—C8121.3 (3)C22—C21—H21B108.3
C4—C5—C8120.9 (3)C20—C21—H21B108.3
C5—C6—C7122.2 (3)C22—C21—H21A108.3
C5—C6—H6118.9C20—C21—H21A108.3
C7—C6—H6118.9H21B—C21—H21A107.4
C2—C7—C6119.2 (3)C23—C22—C21124.7 (4)
C2—C7—H7120.4C23—C22—C25124.0 (5)
C6—C7—H7120.4C21—C22—C25111.3 (4)
N1—C8—C5112.8 (3)C22—C23—C24125.0 (4)
N1—C8—H8B109.0C22—C23—C17117.8 (4)
C5—C8—H8B109.0C24—C23—C17117.1 (4)
N1—C8—H8A109.0C23—C24—H24B109.5
C5—C8—H8A109.0C23—C24—H24C109.5
H8B—C8—H8A107.8H24B—C24—H24C109.5
N1—C9—C10113.0 (3)C23—C24—H24A109.5
N1—C9—C17100.3 (3)H24B—C24—H24A109.5
C10—C9—C17118.0 (3)H24C—C24—H24A109.5
N1—C9—H9108.3C22—C25—H25B109.5
C10—C9—H9108.3C22—C25—H25C109.5
C17—C9—H9108.3H25B—C25—H25C109.5
C11—C10—C9117.1 (3)C22—C25—H25A109.5
C11—C10—H10B108.0H25B—C25—H25A109.5
C9—C10—H10B108.0H25C—C25—H25A109.5
C11—C10—H10A108.0O3—C26—O4123.2 (4)
C9—C10—H10A108.0O3—C26—C20124.3 (4)
H10B—C10—H10A107.3O4—C26—C20112.4 (4)
C12—C11—C16117.6 (4)C28—C27—O4109.4 (5)
C12—C11—C10122.4 (4)C28—C27—H27B109.8
C16—C11—C10120.0 (4)O4—C27—H27B109.8
C13—C12—C11120.5 (5)C28—C27—H27A109.8
C13—C12—H12119.8O4—C27—H27A109.8
C11—C12—H12119.8H27B—C27—H27A108.2
C14—C13—C12121.4 (6)C27—C28—H28C109.5
C14—C13—H13119.3C27—C28—H28B109.5
C12—C13—H13119.3H28C—C28—H28B109.5
C13—C14—C15119.7 (5)C27—C28—H28A109.5
C13—C14—H14120.1H28C—C28—H28A109.5
C15—C14—H14120.1H28B—C28—H28A109.5
C14—C15—C16120.2 (5)Cl1—C29—Cl2111.8 (4)
C14—C15—H15119.9Cl1—C29—H29A109.3
C16—C15—H15119.9Cl2—C29—H29A109.3
C15—C16—C11120.6 (5)Cl1—C29—H29B109.3
C15—C16—H16119.7Cl2—C29—H29B109.3
C11—C16—H16119.7H29A—C29—H29B107.9
C18—C17—C23110.4 (3)
D—H···AD—HH···AD···AD—H···A
C29—H29B···O2i0.972.423.313 (7)153
C6—H6···O3ii0.932.653.562 (5)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C29—H29B⋯O2i 0.972.423.313 (7)153
C6—H6⋯O3ii 0.932.653.562 (5)166

Symmetry codes: (i) ; (ii) .

  2 in total

1.  10-Phenyl-[12]-cytochalasins Z7, Z8, and Z9 from the marine-derived fungus Spicaria elegans.

Authors:  Rui Liu; Qianqun Gu; Weiming Zhu; Chengbin Cui; Guotao Fan; Yuchun Fang; Tianjiao Zhu; Hongbing Liu
Journal:  J Nat Prod       Date:  2006-06       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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