Literature DB >> 23424578

3β-Acet-oxy-19-hy-droxy-Δ(5)-pregnen-20-one.

Aike Meier Zu Greffen1, Darius P Kranz, Jörg-M Neudörfl, Hans-Günther Schmalz.   

Abstract

In the title compound, C(23)H(34)O(4), the C/D and D/E rings are trans fused and the A/B ring possesses an anti fusion. The two cyclo-hexane rings adopt a chair conformation while the cyclo-hexene ring exhibits a half-chair conformation. The cyclo-pentane ring displays an envelope conformation with the C atom bearing the methyl group as the flap. In the crystal, the mol-ecules are linked by O-H⋯O hydrogen bonds, forming chains along the b axis.

Entities:  

Year:  2013        PMID: 23424578      PMCID: PMC3569832          DOI: 10.1107/S1600536813002493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For an overview of steroids as biologically important mol­ecules, see: Fieser & Fieser (1961) ▶; Hanson (2010 ▶). For examples of steroids possessing a rearranged A/B-ring system, see: Du et al. (2008 ▶); Aoki et al. (2006 ▶); Flyer et al. (2010 ▶). For related C-19-functionalized steroids, see: El Sheikh et al. (2007 ▶); Shenvi et al. (2008 ▶). For an overview of remote functionalization, see: Reese (2001 ▶); Heusler & Kalvoda (1964 ▶). For the first synthesis of the title compound, see: Halpern et al. (1963 ▶). For examples of the title compound as an inter­mediate for rearranged A/B-ring systems, see: Knox et al. (1965 ▶); Kranz et al. (2011 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C23H34O4 M = 374.50 Orthorhombic, a = 8.6960 (6) Å b = 12.3708 (4) Å c = 18.3303 (10) Å V = 1971.91 (18) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.3 × 0.3 × 0.3 mm

Data collection

Nonius KappaCCD diffractometer 9889 measured reflections 2457 independent reflections 1943 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.079 S = 0.99 2457 reflections 247 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: COLLECT (Hooft 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SCHAKAL99 (Keller, 1999 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813002493/lr2076sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813002493/lr2076Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H34O4F(000) = 816
Mr = 374.50Dx = 1.261 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9889 reflections
a = 8.6960 (6) Åθ = 2.0–27.0°
b = 12.3708 (4) ŵ = 0.08 mm1
c = 18.3303 (10) ÅT = 100 K
V = 1971.91 (18) Å3Prism, colourless
Z = 40.3 × 0.3 × 0.3 mm
Nonius KappaCCD diffractometer1943 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
Graphite monochromatorθmax = 27.0°, θmin = 2.0°
Phi/ω–Scans scansh = −6→11
9889 measured reflectionsk = −12→15
2457 independent reflectionsl = −21→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0425P)2] where P = (Fo2 + 2Fc2)/3
2457 reflections(Δ/σ)max < 0.001
247 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.03545 (17)0.54114 (10)0.67613 (8)0.0195 (3)
O2−0.13591 (19)0.70584 (11)0.65410 (8)0.0267 (4)
O30.20344 (19)0.38623 (10)0.94444 (8)0.0246 (4)
H3A0.14810.34670.91800.037*
O4−0.0183 (2)0.54920 (11)1.30301 (9)0.0360 (5)
C1−0.0748 (2)0.47261 (15)0.87606 (11)0.0170 (5)
H1A−0.07080.40210.90160.020*
H1B−0.17890.50300.88360.020*
C2−0.0516 (3)0.45275 (14)0.79398 (11)0.0182 (5)
H2A0.04810.41610.78560.022*
H2B−0.13450.40550.77520.022*
C3−0.0541 (3)0.55950 (14)0.75430 (11)0.0180 (5)
H3−0.15470.59640.76340.022*
C40.0760 (3)0.63061 (15)0.78170 (11)0.0188 (5)
H4A0.17580.59530.77130.023*
H4B0.07380.70070.75570.023*
C50.0611 (2)0.64986 (15)0.86293 (11)0.0165 (5)
C60.0610 (3)0.75048 (15)0.88802 (11)0.0172 (5)
H60.06820.80720.85320.021*
C70.0504 (3)0.78158 (14)0.96614 (11)0.0172 (5)
H7A−0.05100.81550.97510.021*
H7B0.13060.83600.97690.021*
C80.0700 (3)0.68595 (14)1.01773 (11)0.0160 (5)
H80.18190.66831.02160.019*
C9−0.0163 (2)0.58588 (14)0.98836 (11)0.0165 (5)
H9−0.12520.60930.98070.020*
C100.0442 (2)0.54967 (14)0.91196 (11)0.0161 (5)
C11−0.0222 (3)0.49458 (14)1.04593 (11)0.0193 (5)
H20A−0.08940.43591.02770.023*
H20B0.08250.46441.05220.023*
C12−0.0822 (3)0.53265 (15)1.12077 (11)0.0185 (5)
H12A−0.19040.55641.11590.022*
H12B−0.07930.47161.15560.022*
C130.0157 (2)0.62660 (15)1.15054 (11)0.0158 (5)
C140.0106 (3)0.71672 (14)1.09252 (11)0.0154 (5)
H14−0.10050.73511.08590.018*
C150.0832 (3)0.81413 (15)1.13106 (11)0.0191 (5)
H15A0.04570.88281.10980.023*
H15B0.19670.81191.12740.023*
C160.0306 (3)0.80233 (14)1.21114 (11)0.0216 (5)
H16A−0.04080.86141.22460.026*
H16B0.12010.80421.24450.026*
C17−0.0521 (3)0.69056 (14)1.21538 (11)0.0173 (5)
H17−0.16270.70401.20350.021*
C180.1795 (3)0.58958 (16)1.16724 (12)0.0232 (5)
H18A0.17640.52771.20060.035*
H18B0.23660.64891.19000.035*
H18C0.23060.56831.12180.035*
C190.2043 (2)0.49419 (15)0.91585 (12)0.0199 (5)
H19A0.24880.49240.86610.024*
H19B0.27280.53910.94660.024*
C20−0.0486 (3)0.64326 (16)1.29112 (11)0.0219 (5)
C21−0.0887 (3)0.71767 (17)1.35354 (11)0.0293 (6)
H21A0.00350.75691.36910.044*
H21B−0.12860.67501.39440.044*
H21C−0.16720.76941.33760.044*
C22−0.0763 (3)0.62330 (17)0.63230 (12)0.0221 (5)
C23−0.0378 (3)0.60069 (18)0.55382 (12)0.0315 (6)
H23A0.07200.61360.54560.047*
H23B−0.09810.64850.52230.047*
H23C−0.06220.52520.54240.047*
U11U22U33U12U13U23
O10.0238 (9)0.0196 (7)0.0151 (8)0.0004 (7)0.0002 (7)−0.0013 (6)
O20.0370 (10)0.0199 (8)0.0232 (9)0.0036 (7)−0.0009 (8)0.0023 (7)
O30.0298 (10)0.0191 (7)0.0248 (9)0.0059 (7)−0.0058 (8)−0.0034 (6)
O40.0604 (13)0.0203 (8)0.0274 (10)0.0038 (9)0.0007 (9)0.0066 (6)
C10.0157 (11)0.0153 (10)0.0200 (11)−0.0005 (9)−0.0012 (9)0.0014 (8)
C20.0176 (12)0.0158 (10)0.0213 (12)0.0008 (9)−0.0014 (10)−0.0024 (8)
C30.0208 (12)0.0187 (10)0.0145 (11)0.0006 (10)0.0020 (10)−0.0025 (8)
C40.0200 (12)0.0184 (10)0.0180 (11)−0.0006 (9)0.0025 (10)0.0005 (9)
C50.0117 (11)0.0207 (11)0.0171 (12)−0.0011 (9)0.0000 (9)0.0013 (8)
C60.0175 (12)0.0184 (10)0.0156 (11)−0.0014 (9)−0.0013 (10)0.0030 (8)
C70.0180 (12)0.0136 (10)0.0199 (11)−0.0022 (9)0.0004 (10)−0.0003 (8)
C80.0148 (11)0.0144 (10)0.0188 (12)−0.0007 (9)0.0010 (10)0.0018 (8)
C90.0179 (12)0.0151 (10)0.0166 (11)−0.0003 (9)−0.0002 (9)0.0008 (8)
C100.0151 (11)0.0149 (10)0.0185 (11)−0.0005 (9)−0.0008 (9)−0.0007 (8)
C110.0239 (13)0.0165 (10)0.0174 (12)−0.0011 (9)−0.0008 (9)−0.0001 (8)
C120.0221 (12)0.0153 (10)0.0183 (11)−0.0025 (9)−0.0002 (10)0.0018 (9)
C130.0172 (11)0.0162 (10)0.0139 (11)0.0002 (9)−0.0005 (9)0.0022 (8)
C140.0147 (11)0.0138 (10)0.0177 (11)0.0004 (9)−0.0003 (9)0.0011 (8)
C150.0226 (12)0.0167 (10)0.0179 (12)−0.0032 (9)−0.0010 (10)−0.0011 (8)
C160.0283 (14)0.0161 (10)0.0204 (12)−0.0047 (10)0.0007 (11)−0.0028 (8)
C170.0190 (12)0.0162 (10)0.0166 (11)−0.0017 (9)−0.0023 (10)0.0011 (8)
C180.0236 (13)0.0228 (11)0.0232 (13)0.0034 (10)−0.0024 (10)0.0022 (10)
C190.0164 (12)0.0185 (11)0.0250 (12)0.0001 (9)−0.0017 (10)−0.0007 (9)
C200.0219 (13)0.0230 (11)0.0208 (12)−0.0033 (10)−0.0033 (11)0.0022 (9)
C210.0440 (17)0.0237 (12)0.0203 (13)−0.0065 (11)0.0002 (12)−0.0009 (9)
C220.0225 (12)0.0230 (12)0.0208 (12)−0.0050 (10)−0.0024 (11)0.0019 (9)
C230.0393 (17)0.0329 (12)0.0223 (13)−0.0003 (12)0.0019 (12)−0.0001 (10)
O1—C221.344 (2)C11—C121.542 (3)
O1—C31.460 (2)C11—H20A0.9900
O2—C221.213 (2)C11—H20B0.9900
O3—C191.435 (2)C12—C131.541 (3)
O3—H3A0.8400C12—H12A0.9900
O4—C201.213 (2)C12—H12B0.9900
C1—C21.538 (3)C13—C181.527 (3)
C1—C101.553 (3)C13—C141.541 (3)
C1—H1A0.9900C13—C171.545 (3)
C1—H1B0.9900C14—C151.533 (3)
C2—C31.508 (3)C14—H141.0000
C2—H2A0.9900C15—C161.545 (3)
C2—H2B0.9900C15—H15A0.9900
C3—C41.519 (3)C15—H15B0.9900
C3—H31.0000C16—C171.561 (3)
C4—C51.513 (3)C16—H16A0.9900
C4—H4A0.9900C16—H16B0.9900
C4—H4B0.9900C17—C201.507 (3)
C5—C61.327 (3)C17—H171.0000
C5—C101.538 (3)C18—H18A0.9800
C6—C71.486 (3)C18—H18B0.9800
C6—H60.9500C18—H18C0.9800
C7—C81.524 (2)C19—H19A0.9900
C7—H7A0.9900C19—H19B0.9900
C7—H7B0.9900C20—C211.509 (3)
C8—C141.514 (3)C21—H21A0.9800
C8—C91.544 (3)C21—H21B0.9800
C8—H81.0000C21—H21C0.9800
C9—C111.547 (3)C22—C231.503 (3)
C9—C101.562 (3)C23—H23A0.9800
C9—H91.0000C23—H23B0.9800
C10—C191.554 (3)C23—H23C0.9800
C22—O1—C3116.09 (15)C11—C12—H12A109.4
C19—O3—H3A109.5C13—C12—H12B109.4
C2—C1—C10115.17 (17)C11—C12—H12B109.4
C2—C1—H1A108.5H12A—C12—H12B108.0
C10—C1—H1A108.5C18—C13—C12111.11 (16)
C2—C1—H1B108.5C18—C13—C14112.45 (17)
C10—C1—H1B108.5C12—C13—C14106.58 (16)
H1A—C1—H1B107.5C18—C13—C17110.81 (18)
C3—C2—C1109.27 (15)C12—C13—C17116.62 (17)
C3—C2—H2A109.8C14—C13—C1798.59 (14)
C1—C2—H2A109.8C8—C14—C15118.33 (17)
C3—C2—H2B109.8C8—C14—C13115.67 (15)
C1—C2—H2B109.8C15—C14—C13103.82 (16)
H2A—C2—H2B108.3C8—C14—H14106.0
O1—C3—C2109.60 (14)C15—C14—H14106.0
O1—C3—C4109.38 (16)C13—C14—H14106.0
C2—C3—C4109.69 (17)C14—C15—C16103.98 (16)
O1—C3—H3109.4C14—C15—H15A111.0
C2—C3—H3109.4C16—C15—H15A111.0
C4—C3—H3109.4C14—C15—H15B111.0
C5—C4—C3110.67 (17)C16—C15—H15B111.0
C5—C4—H4A109.5H15A—C15—H15B109.0
C3—C4—H4A109.5C15—C16—C17105.52 (15)
C5—C4—H4B109.5C15—C16—H16A110.6
C3—C4—H4B109.5C17—C16—H16A110.6
H4A—C4—H4B108.1C15—C16—H16B110.6
C6—C5—C4119.25 (17)C17—C16—H16B110.6
C6—C5—C10123.59 (18)H16A—C16—H16B108.8
C4—C5—C10117.15 (16)C20—C17—C13120.13 (16)
C5—C6—C7125.24 (18)C20—C17—C16112.36 (17)
C5—C6—H6117.4C13—C17—C16103.86 (16)
C7—C6—H6117.4C20—C17—H17106.6
C6—C7—C8112.96 (16)C13—C17—H17106.6
C6—C7—H7A109.0C16—C17—H17106.6
C8—C7—H7A109.0C13—C18—H18A109.5
C6—C7—H7B109.0C13—C18—H18B109.5
C8—C7—H7B109.0H18A—C18—H18B109.5
H7A—C7—H7B107.8C13—C18—H18C109.5
C14—C8—C7109.19 (15)H18A—C18—H18C109.5
C14—C8—C9110.59 (17)H18B—C18—H18C109.5
C7—C8—C9110.59 (16)O3—C19—C10115.04 (17)
C14—C8—H8108.8O3—C19—H19A108.5
C7—C8—H8108.8C10—C19—H19A108.5
C9—C8—H8108.8O3—C19—H19B108.5
C8—C9—C11111.31 (16)C10—C19—H19B108.5
C8—C9—C10112.25 (16)H19A—C19—H19B107.5
C11—C9—C10114.42 (15)O4—C20—C17122.86 (19)
C8—C9—H9106.1O4—C20—C21119.94 (19)
C11—C9—H9106.1C17—C20—C21117.18 (17)
C10—C9—H9106.1C20—C21—H21A109.5
C5—C10—C1108.10 (16)C20—C21—H21B109.5
C5—C10—C19107.29 (16)H21A—C21—H21B109.5
C1—C10—C19110.20 (15)C20—C21—H21C109.5
C5—C10—C9108.97 (15)H21A—C21—H21C109.5
C1—C10—C9109.34 (17)H21B—C21—H21C109.5
C19—C10—C9112.81 (17)O2—C22—O1123.6 (2)
C12—C11—C9113.28 (15)O2—C22—C23124.6 (2)
C12—C11—H20A108.9O1—C22—C23111.88 (18)
C9—C11—H20A108.9C22—C23—H23A109.5
C12—C11—H20B108.9C22—C23—H23B109.5
C9—C11—H20B108.9H23A—C23—H23B109.5
H20A—C11—H20B107.7C22—C23—H23C109.5
C13—C12—C11111.00 (17)H23A—C23—H23C109.5
C13—C12—H12A109.4H23B—C23—H23C109.5
C10—C1—C2—C3−57.1 (2)C9—C11—C12—C13−56.8 (2)
C22—O1—C3—C2162.62 (17)C11—C12—C13—C18−65.7 (2)
C22—O1—C3—C4−77.1 (2)C11—C12—C13—C1457.1 (2)
C1—C2—C3—O1−178.82 (16)C11—C12—C13—C17166.01 (16)
C1—C2—C3—C461.1 (2)C7—C8—C14—C15−58.5 (2)
O1—C3—C4—C5−179.18 (15)C9—C8—C14—C15179.59 (17)
C2—C3—C4—C5−58.9 (2)C7—C8—C14—C13177.42 (17)
C3—C4—C5—C6−126.4 (2)C9—C8—C14—C1355.5 (2)
C3—C4—C5—C1052.6 (2)C18—C13—C14—C863.1 (2)
C4—C5—C6—C7−178.7 (2)C12—C13—C14—C8−58.9 (2)
C10—C5—C6—C72.3 (4)C17—C13—C14—C8179.88 (18)
C5—C6—C7—C810.9 (3)C18—C13—C14—C15−68.3 (2)
C6—C7—C8—C14−162.88 (18)C12—C13—C14—C15169.74 (17)
C6—C7—C8—C9−41.0 (3)C17—C13—C14—C1548.5 (2)
C14—C8—C9—C11−48.9 (2)C8—C14—C15—C16−164.60 (18)
C7—C8—C9—C11−169.97 (18)C13—C14—C15—C16−34.9 (2)
C14—C8—C9—C10−178.62 (16)C14—C15—C16—C176.9 (2)
C7—C8—C9—C1060.3 (2)C18—C13—C17—C20−51.9 (2)
C6—C5—C10—C1134.0 (2)C12—C13—C17—C2076.5 (2)
C4—C5—C10—C1−45.0 (2)C14—C13—C17—C20−169.98 (19)
C6—C5—C10—C19−107.2 (2)C18—C13—C17—C1674.70 (19)
C4—C5—C10—C1973.8 (2)C12—C13—C17—C16−156.87 (17)
C6—C5—C10—C915.2 (3)C14—C13—C17—C16−43.38 (19)
C4—C5—C10—C9−163.72 (18)C15—C16—C17—C20154.51 (18)
C2—C1—C10—C546.9 (2)C15—C16—C17—C1323.2 (2)
C2—C1—C10—C19−70.0 (2)C5—C10—C19—O3−165.71 (16)
C2—C1—C10—C9165.42 (16)C1—C10—C19—O3−48.2 (2)
C8—C9—C10—C5−45.7 (2)C9—C10—C19—O374.3 (2)
C11—C9—C10—C5−173.76 (17)C13—C17—C20—O4−12.8 (3)
C8—C9—C10—C1−163.62 (15)C16—C17—C20—O4−135.4 (2)
C11—C9—C10—C168.3 (2)C13—C17—C20—C21168.8 (2)
C8—C9—C10—C1973.38 (19)C16—C17—C20—C2146.2 (3)
C11—C9—C10—C19−54.7 (2)C3—O1—C22—O2−5.2 (3)
C8—C9—C11—C1251.4 (2)C3—O1—C22—C23174.20 (17)
C10—C9—C11—C12179.96 (18)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O2i0.842.192.9305 (19)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O2i 0.842.192.9305 (19)147

Symmetry code: (i) .

  10 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 2.  Steroids: partial synthesis in medicinal chemistry.

Authors:  James R Hanson
Journal:  Nat Prod Rep       Date:  2010-04-27       Impact factor: 13.423

3.  Cortistatins A, B, C, and D, anti-angiogenic steroidal alkaloids, from the marine sponge Corticium simplex.

Authors:  Shunji Aoki; Yasuo Watanabe; Mami Sanagawa; Andi Setiawan; Naoyuki Kotoku; Motomasa Kobayashi
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 5.  Remote functionalization reactions in steroids.

Authors:  P B Reese
Journal:  Steroids       Date:  2001-06       Impact factor: 2.668

6.  Synthesis of cortistatins A, J, K and L.

Authors:  Alec N Flyer; Chong Si; Andrew G Myers
Journal:  Nat Chem       Date:  2010-08-01       Impact factor: 24.427

7.  Unusual C25 steroid isomers with bicyclo[4.4.1]A/B rings from a volcano ash-derived fungus Penicillium citrinum.

Authors:  Lin Du; Tianjiao Zhu; Yuchun Fang; Qianqun Gu; Weiming Zhu
Journal:  J Nat Prod       Date:  2008-07-26       Impact factor: 4.050

8.  Steroids. CCLXXXIV. Reactions of 19-hydroxy-delta-5-3-acetoxy steroids with diethyl(2-chloro-1,1,2-trifluoroethyl) amine.

Authors:  L H Knox; E Velarde; S Berger; I Delfín; R Grezemkovsky; A D Cross
Journal:  J Org Chem       Date:  1965-12       Impact factor: 4.354

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  Synthesis of (+)-cortistatin A.

Authors:  Ryan A Shenvi; Carlos A Guerrero; Jun Shi; Chuang-Chuang Li; Phil S Baran
Journal:  J Am Chem Soc       Date:  2008-05-14       Impact factor: 15.419

  10 in total

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