Literature DB >> 23424535

3-[2-(5-tert-Butyl-1,2-oxazol-3-yl)hydrazinyl-idene]chroman-2,4-dione.

Ahmed Jashari1, Emil Popovski, Bozhana Mikhova, Rositsa P Nikolova, Boris L Shivachev.   

Abstract

In the title compound, C(16)H(15)N(3)O(4), the dihedral angle between the chromane and isoxazole rings [r.m.s. deviations = 0.042 and 0.007 Å, respectively] is 20.33 (12)°. The mol-ecular geometry is stabilized by an intra-molecular N-H⋯O hydrogen bond. In the crystal, N-H⋯O hydrogen bonds generate chains along the c-axis direction. The crystal studied was a non-morohedral twin.

Entities:  

Year:  2013        PMID: 23424535      PMCID: PMC3569789          DOI: 10.1107/S1600536813000858

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of coumarin derivatives in organic synthesis and as biologically active compounds see: Adavi et al. (2004 ▶); Shi & Zhou (2011 ▶); Toshihiro et al. (2005 ▶).

Experimental

Crystal data

C16H15N3O4 M = 313.31 Monoclinic, a = 13.431 (14) Å b = 9.1803 (9) Å c = 12.638 (4) Å β = 100.49 (8)° V = 1532.3 (17) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 290 K 0.28 × 0.26 × 0.21 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.584, T max = 1.000 13050 measured reflections 3010 independent reflections 2148 reflections with I > 2σ(I) R int = 0.085

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.181 S = 1.09 3010 reflections 215 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813000858/kp2443sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000858/kp2443Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000858/kp2443Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15N3O4F(000) = 656
Mr = 313.31Dx = 1.358 Mg m3
Monoclinic, P21/cMelting point: 419 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.7107 Å
a = 13.431 (14) ÅCell parameters from 4079 reflections
b = 9.1803 (9) Åθ = 3.0–29.4°
c = 12.638 (4) ŵ = 0.10 mm1
β = 100.49 (8)°T = 290 K
V = 1532.3 (17) Å3Prism, yellow
Z = 40.28 × 0.26 × 0.21 mm
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer3010 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2148 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.085
Detector resolution: 10.3974 pixels mm-1θmax = 29.4°, θmin = 3.0°
ω scansh = −16→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −11→12
Tmin = 0.584, Tmax = 1.000l = −15→16
13050 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.181H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0555P)2 + 1.4334P] where P = (Fo2 + 2Fc2)/3
3010 reflections(Δ/σ)max < 0.001
215 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.16 e Å3
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.36.20 (release 27-06-2012 CrysAlis171 .NET) (compiled Jul 11 2012,15:38:31) FTIR (KBr): 1377 cm-1 (CH3δs), 1467.5 cm-1 (N=N), 1740 cm-1 (C=O). NMR atom numbering is according to IUPAC13C NMR (62.9 MHz, DMSO-d6): δ 28.2 (CH3), 32.1 (C t-but), 91.2 (NCCH), 117.4 (C8 of the coumarin ring), 120.4 (C4a of the coumarin ring), 124.9 (C6 of the coumarin ring), 125.7 (C3 of the coumarin ring), 126.8 (C5 of the coumarin ring), 137.0 (C7 of the coumarin ring), 154.1(C8a of the coumarin ring), 157.6 (C2 of the coumarin ring), 162.4 (NCCH), 178.3 (C4 of the coumarin ring), 182.8 (NC).1H NMR (250 MHz, DMSO-d6): δ 1.35 (s, 9H, t-but.), 6.57 (s,1H of the isoxazol ring), 7.37 (dd, J = 8.0, 1.5 Hz, 1H, H8 of the coumarin ring), 7.39 (ddd, J = 8.0, 8.0, 1.5 Hz, 1H, H6 of the coumarin ring), 7.80 (ddd, J = 8.0, 8.0, 1.5 Hz, 1H, C7 of the coumarin ring), 8.00 (dd,1H, dd, J = 8.0, 1.5 Hz, C5 of the coumarin ring). Elemental analysis: C, 61.34; H, 4.83; N, 13.41. TOF MS ES+: m/e: 336[M+Na]+.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1628 (2)0.3116 (3)0.0511 (2)0.0362 (6)
C20.1605 (2)0.4578 (3)0.0958 (2)0.0384 (6)
C30.1281 (2)0.5746 (3)0.0182 (2)0.0369 (6)
C40.1307 (2)0.7207 (3)0.0498 (3)0.0467 (7)
H40.15110.74480.12190.056*
C50.1035 (3)0.8282 (3)−0.0247 (3)0.0571 (9)
H50.10740.9254−0.00350.068*
C60.0701 (3)0.7922 (4)−0.1321 (3)0.0580 (9)
H60.05090.8657−0.18230.070*
C70.0651 (3)0.6488 (4)−0.1651 (3)0.0508 (8)
H70.04210.6250−0.23690.061*
C80.0948 (2)0.5405 (3)−0.0893 (2)0.0389 (6)
C90.1240 (2)0.2823 (3)−0.0636 (2)0.0402 (6)
C100.2869 (2)0.0916 (3)0.2637 (2)0.0408 (6)
C110.3172 (2)−0.0401 (3)0.2229 (2)0.0421 (7)
H110.3060−0.07190.15190.051*
C120.3667 (2)−0.1101 (3)0.3116 (2)0.0432 (7)
C130.4211 (3)−0.2535 (3)0.3317 (3)0.0494 (8)
C140.5276 (3)−0.2268 (4)0.3960 (3)0.0741 (12)
H14A0.5637−0.16270.35630.111*
H14B0.5630−0.31780.40800.111*
H14C0.5229−0.18310.46390.111*
C150.3615 (4)−0.3513 (5)0.3961 (4)0.0790 (12)
H15A0.3550−0.30360.46210.118*
H15B0.3967−0.44190.41190.118*
H15C0.2954−0.36960.35460.118*
C160.4268 (4)−0.3246 (5)0.2235 (3)0.0769 (12)
H16A0.3597−0.33630.18270.115*
H16B0.4586−0.41830.23560.115*
H16C0.4657−0.26400.18440.115*
N10.20237 (19)0.1960 (3)0.10479 (18)0.0390 (5)
N20.2352 (2)0.2092 (3)0.20786 (19)0.0429 (6)
N30.3136 (2)0.1048 (3)0.3673 (2)0.0549 (7)
O10.08744 (16)0.3990 (2)−0.12688 (14)0.0433 (5)
O20.18801 (19)0.4820 (2)0.19257 (15)0.0562 (6)
O30.36552 (18)−0.0258 (3)0.39890 (16)0.0558 (6)
O90.1194 (2)0.1661 (2)−0.10662 (17)0.0594 (7)
H20.231 (3)0.296 (5)0.238 (3)0.076 (13)*
U11U22U33U12U13U23
C10.0388 (15)0.0349 (14)0.0353 (14)−0.0036 (11)0.0082 (11)0.0027 (10)
C20.0438 (16)0.0395 (15)0.0313 (13)−0.0033 (12)0.0057 (11)0.0029 (11)
C30.0358 (14)0.0379 (14)0.0372 (13)−0.0038 (11)0.0071 (11)0.0043 (11)
C40.0489 (18)0.0393 (16)0.0515 (17)−0.0027 (13)0.0079 (14)−0.0030 (13)
C50.064 (2)0.0336 (16)0.076 (2)−0.0014 (14)0.0165 (19)0.0061 (14)
C60.055 (2)0.0499 (19)0.067 (2)0.0043 (15)0.0054 (17)0.0252 (16)
C70.0509 (19)0.0549 (19)0.0435 (16)0.0002 (15)0.0000 (14)0.0131 (14)
C80.0362 (14)0.0378 (14)0.0420 (14)−0.0032 (11)0.0047 (12)0.0046 (11)
C90.0434 (16)0.0399 (15)0.0374 (14)−0.0035 (12)0.0072 (12)0.0014 (12)
C100.0366 (14)0.0439 (16)0.0408 (14)0.0000 (12)0.0043 (11)0.0022 (12)
C110.0395 (15)0.0507 (17)0.0341 (13)−0.0037 (13)0.0011 (11)0.0016 (12)
C120.0389 (16)0.0498 (18)0.0394 (15)0.0017 (12)0.0034 (12)−0.0018 (12)
C130.0468 (18)0.0475 (18)0.0500 (17)0.0080 (14)−0.0015 (14)−0.0013 (13)
C140.048 (2)0.070 (2)0.091 (3)0.0149 (18)−0.0216 (19)−0.004 (2)
C150.088 (3)0.060 (2)0.087 (3)0.002 (2)0.011 (2)0.016 (2)
C160.082 (3)0.072 (3)0.073 (3)0.025 (2)0.006 (2)−0.018 (2)
N10.0403 (13)0.0437 (13)0.0329 (11)−0.0042 (10)0.0064 (10)0.0017 (9)
N20.0500 (15)0.0410 (14)0.0355 (12)0.0030 (11)0.0022 (11)0.0009 (10)
N30.0614 (18)0.0571 (17)0.0414 (14)0.0205 (13)−0.0029 (12)−0.0005 (12)
O10.0517 (12)0.0418 (11)0.0336 (10)−0.0026 (9)0.0000 (9)0.0015 (8)
O20.0862 (18)0.0425 (12)0.0360 (11)−0.0027 (11)0.0010 (11)−0.0033 (9)
O30.0627 (15)0.0603 (14)0.0393 (11)0.0232 (11)−0.0041 (10)0.0009 (10)
O90.0917 (19)0.0402 (12)0.0429 (12)−0.0031 (11)0.0028 (12)−0.0056 (9)
C1—N11.319 (4)C10—N21.403 (4)
C1—C21.459 (4)C11—C121.356 (4)
C1—C91.473 (4)C11—H110.9300
C2—O21.231 (3)C12—O31.350 (4)
C2—C31.465 (4)C12—C131.505 (4)
C3—C81.386 (4)C13—C161.530 (5)
C3—C41.397 (4)C13—C141.531 (5)
C4—C51.367 (5)C13—C151.531 (6)
C4—H40.9300C14—H14A0.9600
C5—C61.390 (5)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
C6—C71.379 (5)C15—H15A0.9600
C6—H60.9300C15—H15B0.9600
C7—C81.388 (4)C15—H15C0.9600
C7—H70.9300C16—H16A0.9600
C8—O11.381 (3)C16—H16B0.9600
C9—O91.194 (3)C16—H16C0.9600
C9—O11.373 (3)N1—N21.303 (3)
C10—N31.299 (4)N2—H20.89 (4)
C10—C111.404 (4)N3—O31.408 (3)
N1—C1—C2125.2 (2)O3—C12—C13116.1 (2)
N1—C1—C9113.4 (2)C11—C12—C13134.8 (3)
C2—C1—C9121.4 (2)C12—C13—C16108.9 (3)
O2—C2—C1121.8 (2)C12—C13—C14109.1 (3)
O2—C2—C3122.1 (3)C16—C13—C14110.4 (3)
C1—C2—C3116.0 (2)C12—C13—C15108.6 (3)
C8—C3—C4118.9 (3)C16—C13—C15109.9 (3)
C8—C3—C2119.6 (2)C14—C13—C15109.9 (3)
C4—C3—C2121.5 (3)C13—C14—H14A109.5
C5—C4—C3120.5 (3)C13—C14—H14B109.5
C5—C4—H4119.8H14A—C14—H14B109.5
C3—C4—H4119.8C13—C14—H14C109.5
C4—C5—C6119.9 (3)H14A—C14—H14C109.5
C4—C5—H5120.0H14B—C14—H14C109.5
C6—C5—H5120.0C13—C15—H15A109.5
C7—C6—C5120.8 (3)C13—C15—H15B109.5
C7—C6—H6119.6H15A—C15—H15B109.5
C5—C6—H6119.6C13—C15—H15C109.5
C6—C7—C8118.9 (3)H15A—C15—H15C109.5
C6—C7—H7120.5H15B—C15—H15C109.5
C8—C7—H7120.5C13—C16—H16A109.5
O1—C8—C3122.7 (2)C13—C16—H16B109.5
O1—C8—C7116.3 (3)H16A—C16—H16B109.5
C3—C8—C7121.0 (3)C13—C16—H16C109.5
O9—C9—O1116.7 (3)H16A—C16—H16C109.5
O9—C9—C1126.2 (3)H16B—C16—H16C109.5
O1—C9—C1117.1 (2)N2—N1—C1118.1 (2)
N3—C10—C11113.9 (3)N1—N2—C10118.5 (3)
N3—C10—N2117.1 (3)N1—N2—H2118 (3)
C11—C10—N2129.0 (3)C10—N2—H2123 (3)
C12—C11—C10103.6 (2)C10—N3—O3103.7 (2)
C12—C11—H11128.2C9—O1—C8122.6 (2)
C10—C11—H11128.2C12—O3—N3109.6 (2)
O3—C12—C11109.1 (3)
N1—C1—C2—O2−7.1 (5)N2—C10—C11—C12177.9 (3)
C9—C1—C2—O2176.2 (3)C10—C11—C12—O30.2 (3)
N1—C1—C2—C3170.3 (3)C10—C11—C12—C13−178.8 (4)
C9—C1—C2—C3−6.4 (4)O3—C12—C13—C16−172.7 (3)
O2—C2—C3—C8−177.9 (3)C11—C12—C13—C166.2 (5)
C1—C2—C3—C84.8 (4)O3—C12—C13—C14−52.1 (4)
O2—C2—C3—C42.7 (4)C11—C12—C13—C14126.8 (4)
C1—C2—C3—C4−174.7 (3)O3—C12—C13—C1567.7 (4)
C8—C3—C4—C5−1.8 (5)C11—C12—C13—C15−113.4 (4)
C2—C3—C4—C5177.7 (3)C2—C1—N1—N25.7 (4)
C3—C4—C5—C61.9 (5)C9—C1—N1—N2−177.3 (3)
C4—C5—C6—C7−0.7 (6)C1—N1—N2—C10−173.5 (3)
C5—C6—C7—C8−0.6 (5)N3—C10—N2—N1−176.1 (3)
C4—C3—C8—O1−178.3 (3)C11—C10—N2—N15.8 (5)
C2—C3—C8—O12.2 (4)C11—C10—N3—O30.2 (4)
C4—C3—C8—C70.5 (4)N2—C10—N3—O3−178.2 (2)
C2—C3—C8—C7−179.0 (3)O9—C9—O1—C8−175.2 (3)
C6—C7—C8—O1179.6 (3)C1—C9—O1—C86.2 (4)
C6—C7—C8—C30.7 (5)C3—C8—O1—C9−8.2 (4)
N1—C1—C9—O95.7 (5)C7—C8—O1—C9173.0 (3)
C2—C1—C9—O9−177.3 (3)C11—C12—O3—N3−0.1 (4)
N1—C1—C9—O1−175.9 (2)C13—C12—O3—N3179.1 (3)
C2—C1—C9—O11.2 (4)C10—N3—O3—C12−0.1 (4)
N3—C10—C11—C12−0.2 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···O20.89 (4)1.86 (4)2.581 (3)137 (4)
N2—H2···O9i0.89 (4)2.70 (4)3.249 (4)121 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O20.89 (4)1.86 (4)2.581 (3)137 (4)
N2—H2⋯O9i 0.89 (4)2.70 (4)3.249 (4)121 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Yuan Shi; Cheng-He Zhou
Journal:  Bioorg Med Chem Lett       Date:  2010-12-16       Impact factor: 2.823

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