Literature DB >> 23424513

4-Amino-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide-2-nitro-benzoic acid (1/1).

Graham Smith1, Urs D Wermuth.   

Abstract

In the asymmetric unit of the title co-crystal, C(12)H(14)N(4)O(2)S·C(7)H(5)NO(4), the sulfamethazine and 2-nitro-benzoic acid mol-ecules form a heterodimer through inter-molecular amide-carb-oxy-lic acid N-H⋯O and carb-oxy-lic acid-pyrimidine O-H⋯N hydrogen-bond pairs, giving a cyclic motif [graph set R(2) (2)(8)]. The dihedral angle between the two aromatic ring systems in the sulfamethazine mol-ecule is 88.96 (18)° and the nitro group of the acid is 50% rotationally disordered. Secondary aniline N-H⋯O(sulfone) hydrogen-bonding associations give a two-dimensional structure lying parallel to the ab plane.

Entities:  

Year:  2013        PMID: 23424513      PMCID: PMC3569767          DOI: 10.1107/S1600536813000779

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to sulfamethazole as a model for co-crystal formation, see: Caira (2007 ▶); Ghosh et al. (2011 ▶). For structures of 1:1 adducts of sulfamethazine with nitro­benzoic acid analogues, see: Lynch et al. (2000 ▶); Smith & Wermuth (2012 ▶). For graph-set analysis, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H14N4O2S·C7H5NO4 M = 445.46 Orthorhombic, a = 14.2945 (4) Å b = 8.0115 (3) Å c = 19.0962 (5) Å V = 2186.91 (12) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 200 K 0.30 × 0.21 × 0.12 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.964, T max = 0.980 5541 measured reflections 2777 independent reflections 2587 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.099 S = 1.04 2777 reflections 286 parameters 29 restraints H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 565 Friedel pairs Flack parameter: 0.08 (9) Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813000779/gg2106sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000779/gg2106Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000779/gg2106Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N4O2S·C7H5NO4F(000) = 928
Mr = 445.46Dx = 1.353 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3011 reflections
a = 14.2945 (4) Åθ = 3.1–28.8°
b = 8.0115 (3) ŵ = 0.19 mm1
c = 19.0962 (5) ÅT = 200 K
V = 2186.91 (12) Å3Plate, yellow
Z = 40.30 × 0.21 × 0.12 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer2777 independent reflections
Radiation source: Enhance (Mo) X-ray source2587 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.1°
ω scansh = −17→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −8→9
Tmin = 0.964, Tmax = 0.980l = −23→8
5541 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0555P)2 + 0.5356P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2777 reflectionsΔρmax = 0.29 e Å3
286 parametersΔρmin = −0.21 e Å3
29 restraintsAbsolute structure: Flack (1983), 565 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (9)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
xyzUiso*/UeqOcc. (<1)
S1A0.44672 (4)1.02307 (8)0.75273 (5)0.0249 (2)
O11A0.35295 (13)0.9968 (3)0.72869 (13)0.0342 (7)
O12A0.50151 (14)1.1513 (3)0.72083 (12)0.0326 (7)
N1A0.47662 (18)1.1033 (3)0.95152 (15)0.0352 (8)
N2A0.43078 (16)1.0714 (3)0.83654 (14)0.0288 (8)
N3A0.59047 (17)1.0898 (3)0.86027 (15)0.0334 (8)
N41A0.65507 (17)0.3924 (3)0.7489 (2)0.0538 (12)
C2A0.5032 (2)1.0887 (4)0.88442 (16)0.0273 (9)
C4A0.6585 (2)1.1028 (4)0.9085 (2)0.0392 (11)
C5A0.6372 (3)1.1216 (5)0.9787 (2)0.0497 (14)
C6A0.5446 (3)1.1221 (5)0.99900 (19)0.0429 (11)
C11A0.50792 (17)0.8370 (3)0.75032 (18)0.0262 (8)
C21A0.60295 (19)0.8371 (4)0.73347 (16)0.0286 (9)
C31A0.6509 (2)0.6892 (4)0.73148 (18)0.0312 (9)
C41A0.60616 (19)0.5374 (3)0.7475 (2)0.0324 (9)
C42A0.7565 (2)1.0928 (6)0.8819 (3)0.0592 (15)
C51A0.5098 (2)0.5407 (4)0.76412 (18)0.0323 (9)
C61A0.46169 (19)0.6885 (4)0.76475 (17)0.0289 (9)
C62A0.5143 (3)1.1416 (7)1.0737 (2)0.0663 (16)
O110.28633 (18)0.8862 (4)0.90536 (17)0.0639 (10)
O120.30259 (17)1.0522 (4)0.99775 (15)0.0505 (9)
O210.2682 (14)0.800 (3)1.1121 (18)0.083 (5)0.500
O220.1915 (11)1.0471 (16)1.1479 (5)0.095 (4)0.500
O230.1968 (11)0.9621 (18)1.1692 (5)0.095 (4)0.500
O240.2837 (14)0.842 (3)1.1026 (18)0.083 (5)0.500
N20.2084 (2)0.9099 (6)1.1124 (2)0.0668 (14)
C10.1619 (2)0.9013 (4)0.98691 (19)0.0378 (10)
C20.1370 (2)0.8973 (5)1.05718 (19)0.0408 (11)
C30.0460 (2)0.8689 (5)1.0792 (2)0.0503 (14)
C4−0.0216 (3)0.8434 (6)1.0290 (3)0.0613 (16)
C50.0011 (3)0.8421 (7)0.9596 (3)0.0680 (18)
C60.0926 (3)0.8725 (6)0.9385 (2)0.0580 (14)
C110.2569 (2)0.9455 (5)0.95931 (19)0.0387 (11)
H2A0.375601.033300.852400.0350*
H5A0.684501.133901.011700.0600*
H21A0.633500.936900.723700.0340*
H31A0.713900.689000.719400.0380*
H41A0.716500.382800.735900.0650*
H42A0.624900.304600.754700.0650*
H43A0.787300.998400.902500.0890*
H44A0.789501.193000.894200.0890*
H45A0.755701.080700.831900.0890*
H51A0.478800.441800.774700.0390*
H61A0.398000.689500.774800.0350*
H62A0.447301.137301.076200.0990*
H63A0.535801.247101.091300.0990*
H64A0.540401.053101.101300.0990*
H30.031100.867201.126600.0600*
H4−0.083500.826901.042600.0740*
H5−0.044800.820700.926300.0820*
H60.107100.873500.891000.0690*
H120.361501.069000.982300.0760*
U11U22U33U12U13U23
S1A0.0215 (3)0.0274 (3)0.0259 (3)0.0012 (2)−0.0003 (3)−0.0001 (4)
O11A0.0246 (10)0.0395 (11)0.0385 (13)0.0037 (8)−0.0055 (10)−0.0031 (10)
O12A0.0320 (11)0.0301 (11)0.0357 (12)−0.0002 (8)0.0019 (10)0.0056 (11)
N1A0.0352 (14)0.0415 (16)0.0289 (14)−0.0063 (12)0.0044 (12)−0.0024 (13)
N2A0.0196 (12)0.0357 (13)0.0312 (14)−0.0001 (10)0.0047 (11)−0.0042 (12)
N3A0.0287 (13)0.0381 (15)0.0334 (15)−0.0045 (11)0.0021 (12)−0.0023 (13)
N41A0.0292 (12)0.0281 (13)0.104 (3)0.0001 (10)0.0144 (19)0.000 (2)
C2A0.0290 (15)0.0261 (15)0.0267 (16)−0.0033 (12)0.0013 (13)−0.0014 (13)
C4A0.0333 (17)0.0414 (18)0.043 (2)−0.0065 (14)−0.0031 (17)−0.0012 (17)
C5A0.047 (2)0.063 (3)0.039 (2)−0.0157 (18)−0.0120 (18)0.003 (2)
C6A0.048 (2)0.050 (2)0.0306 (18)−0.0159 (17)0.0001 (16)−0.0002 (17)
C11A0.0234 (12)0.0310 (14)0.0242 (13)0.0008 (10)−0.0014 (14)−0.0014 (15)
C21A0.0236 (13)0.0308 (14)0.0314 (17)−0.0061 (11)0.0053 (12)0.0009 (13)
C31A0.0209 (13)0.0333 (15)0.0395 (19)0.0001 (11)0.0049 (13)−0.0029 (14)
C41A0.0264 (13)0.0318 (14)0.0391 (17)−0.0005 (11)0.0013 (17)0.0005 (17)
C42A0.0316 (19)0.079 (3)0.067 (3)−0.007 (2)−0.006 (2)−0.008 (3)
C51A0.0278 (14)0.0282 (14)0.041 (2)−0.0072 (11)0.0010 (15)−0.0015 (15)
C61A0.0190 (12)0.0346 (15)0.033 (2)−0.0056 (10)0.0014 (13)−0.0021 (14)
C62A0.080 (3)0.090 (3)0.029 (2)−0.017 (3)0.001 (2)−0.004 (2)
O110.0497 (15)0.092 (2)0.0499 (18)−0.0238 (14)0.0210 (14)−0.0240 (17)
O120.0360 (13)0.0713 (17)0.0443 (16)−0.0111 (12)0.0148 (12)−0.0126 (15)
O210.054 (6)0.123 (10)0.073 (8)0.001 (7)−0.004 (4)0.065 (6)
O220.060 (3)0.186 (12)0.039 (5)−0.011 (7)0.000 (5)−0.033 (6)
O230.060 (3)0.186 (12)0.039 (5)−0.011 (7)0.000 (5)−0.033 (6)
O240.054 (6)0.123 (10)0.073 (8)0.001 (7)−0.004 (4)0.065 (6)
N20.0385 (19)0.125 (3)0.037 (2)−0.011 (2)0.0077 (17)0.001 (2)
C10.0342 (16)0.046 (2)0.0333 (18)−0.0038 (14)0.0065 (16)0.0044 (17)
C20.0335 (17)0.052 (2)0.037 (2)−0.0019 (15)0.0062 (16)0.0041 (17)
C30.043 (2)0.070 (3)0.038 (2)−0.0094 (18)0.0142 (18)0.003 (2)
C40.036 (2)0.088 (3)0.060 (3)−0.020 (2)0.010 (2)−0.001 (3)
C50.042 (2)0.113 (4)0.049 (3)−0.023 (2)−0.008 (2)0.006 (3)
C60.043 (2)0.096 (3)0.035 (2)−0.015 (2)0.0038 (17)0.005 (2)
C110.0347 (18)0.048 (2)0.0335 (19)−0.0029 (15)0.0057 (16)−0.0002 (17)
S1A—O11A1.432 (2)C21A—C31A1.369 (4)
S1A—O12A1.428 (2)C31A—C41A1.408 (4)
S1A—N2A1.662 (3)C41A—C51A1.414 (4)
S1A—C11A1.729 (2)C51A—C61A1.369 (4)
O11—C111.210 (5)C5A—H5A0.9300
O12—C111.302 (5)C21A—H21A0.9300
O21—N21.23 (2)C31A—H31A0.9300
O22—N21.314 (13)C42A—H45A0.9600
O23—N21.174 (11)C42A—H43A0.9600
O24—N21.22 (2)C42A—H44A0.9600
O12—H120.9000C51A—H51A0.9300
N1A—C6A1.338 (5)C61A—H61A0.9300
N1A—C2A1.342 (4)C62A—H62A0.9600
N2A—C2A1.388 (4)C62A—H63A0.9600
N3A—C2A1.330 (4)C62A—H64A0.9600
N3A—C4A1.343 (4)C1—C61.375 (5)
N41A—C41A1.356 (3)C1—C111.499 (4)
N2A—H2A0.9000C1—C21.389 (5)
N41A—H41A0.9200C2—C31.386 (4)
N41A—H42A0.8300C3—C41.376 (6)
N2—C21.471 (5)C4—C51.365 (8)
C4A—C42A1.492 (4)C5—C61.390 (6)
C4A—C5A1.383 (5)C3—H30.9300
C5A—C6A1.379 (6)C4—H40.9300
C6A—C62A1.499 (5)C5—H50.9300
C11A—C21A1.396 (4)C6—H60.9300
C11A—C61A1.389 (4)
O11A—S1A—O12A118.83 (14)C11A—C21A—H21A120.00
O11A—S1A—N2A102.39 (13)C31A—C21A—H21A120.00
O11A—S1A—C11A109.77 (13)C21A—C31A—H31A120.00
O12A—S1A—N2A108.56 (13)C41A—C31A—H31A120.00
O12A—S1A—C11A109.35 (13)H43A—C42A—H44A109.00
N2A—S1A—C11A107.21 (15)C4A—C42A—H44A109.00
C2A—N1A—C6A116.8 (3)C4A—C42A—H43A109.00
S1A—N2A—C2A123.7 (2)H44A—C42A—H45A109.00
C2A—N3A—C4A116.2 (3)H43A—C42A—H45A109.00
C2A—N2A—H2A118.00C4A—C42A—H45A109.00
S1A—N2A—H2A111.00C61A—C51A—H51A120.00
C41A—N41A—H41A124.00C41A—C51A—H51A120.00
H41A—N41A—H42A118.00C11A—C61A—H61A120.00
C41A—N41A—H42A117.00C51A—C61A—H61A120.00
O24—N2—C2118.1 (16)H63A—C62A—H64A110.00
O23—N2—C2126.1 (8)C6A—C62A—H62A109.00
O21—N2—O22137.0 (16)C6A—C62A—H63A109.00
O21—N2—C2115.5 (15)H62A—C62A—H63A109.00
O22—N2—C2107.4 (7)H62A—C62A—H64A110.00
N1A—C2A—N3A126.6 (3)C6A—C62A—H64A109.00
N1A—C2A—N2A115.3 (3)C2—C1—C11125.3 (3)
N2A—C2A—N3A118.2 (3)C6—C1—C11117.1 (3)
N3A—C4A—C5A120.9 (3)C2—C1—C6117.5 (3)
C5A—C4A—C42A122.9 (4)N2—C2—C3116.4 (3)
N3A—C4A—C42A116.2 (4)C1—C2—C3122.5 (3)
C4A—C5A—C6A119.0 (4)N2—C2—C1120.9 (3)
N1A—C6A—C5A120.4 (3)C2—C3—C4118.2 (4)
N1A—C6A—C62A116.6 (4)C3—C4—C5120.7 (4)
C5A—C6A—C62A123.0 (4)C4—C5—C6120.3 (4)
C21A—C11A—C61A120.6 (2)C1—C6—C5120.8 (4)
S1A—C11A—C61A119.5 (2)O11—C11—C1121.4 (3)
S1A—C11A—C21A119.9 (2)O12—C11—C1114.3 (3)
C11A—C21A—C31A119.5 (3)O11—C11—O12124.3 (3)
C21A—C31A—C41A120.9 (3)C2—C3—H3121.00
C31A—C41A—C51A118.4 (2)C4—C3—H3121.00
N41A—C41A—C31A120.7 (3)C3—C4—H4120.00
N41A—C41A—C51A120.9 (3)C5—C4—H4120.00
C41A—C51A—C61A120.5 (3)C4—C5—H5120.00
C11A—C61A—C51A120.0 (3)C6—C5—H5120.00
C4A—C5A—H5A121.00C1—C6—H6120.00
C6A—C5A—H5A120.00C5—C6—H6120.00
O11A—S1A—N2A—C2A172.1 (2)O23—N2—C2—C3−31.7 (11)
O12A—S1A—N2A—C2A−61.5 (3)O24—N2—C2—C1−36.8 (15)
C11A—S1A—N2A—C2A56.6 (3)O24—N2—C2—C3138.5 (14)
O11A—S1A—C11A—C21A145.0 (3)O22—N2—C2—C3−67.6 (7)
O11A—S1A—C11A—C61A−34.6 (3)O23—N2—C2—C1153.1 (9)
O12A—S1A—C11A—C21A13.0 (3)C42A—C4A—C5A—C6A−177.1 (4)
O12A—S1A—C11A—C61A−166.6 (3)N3A—C4A—C5A—C6A1.8 (5)
N2A—S1A—C11A—C21A−104.5 (3)C4A—C5A—C6A—N1A0.5 (6)
N2A—S1A—C11A—C61A75.9 (3)C4A—C5A—C6A—C62A180.0 (4)
O24—O21—N2—O23−106 (6)C61A—C11A—C21A—C31A−0.3 (5)
O24—O21—N2—C2102 (6)S1A—C11A—C61A—C51A−178.9 (3)
O24—O21—N2—O22−74 (7)S1A—C11A—C21A—C31A−179.8 (3)
O23—O22—N2—C2127.6 (15)C21A—C11A—C61A—C51A1.5 (5)
O23—O22—N2—O21−56 (3)C11A—C21A—C31A—C41A−1.2 (5)
O23—O22—N2—O24−82 (3)C21A—C31A—C41A—N41A−176.6 (3)
O22—O23—N2—C2−69.3 (18)C21A—C31A—C41A—C51A1.5 (5)
O22—O23—N2—O24120 (2)C31A—C41A—C51A—C61A−0.2 (5)
O22—O23—N2—O21142.5 (18)N41A—C41A—C51A—C61A177.9 (3)
O21—O24—N2—O22124 (5)C41A—C51A—C61A—C11A−1.3 (5)
O21—O24—N2—O2383 (6)C6—C1—C2—N2173.8 (4)
O21—O24—N2—C2−88 (6)C6—C1—C2—C3−1.2 (6)
C2A—N1A—C6A—C62A178.9 (4)C11—C1—C2—N2−10.5 (6)
C6A—N1A—C2A—N2A−179.3 (3)C11—C1—C2—C3174.5 (4)
C6A—N1A—C2A—N3A0.5 (5)C2—C1—C6—C50.6 (6)
C2A—N1A—C6A—C5A−1.7 (5)C11—C1—C6—C5−175.6 (4)
S1A—N2A—C2A—N1A−170.5 (2)C2—C1—C11—O11149.7 (4)
S1A—N2A—C2A—N3A9.7 (4)C2—C1—C11—O12−30.9 (5)
C4A—N3A—C2A—N2A−178.5 (3)C6—C1—C11—O11−34.5 (5)
C2A—N3A—C4A—C5A−2.9 (5)C6—C1—C11—O12144.8 (4)
C4A—N3A—C2A—N1A1.8 (5)N2—C2—C3—C4−175.0 (4)
C2A—N3A—C4A—C42A176.1 (3)C1—C2—C3—C40.2 (6)
O21—N2—C2—C3115.3 (15)C2—C3—C4—C51.6 (7)
O22—N2—C2—C1117.1 (7)C3—C4—C5—C6−2.3 (8)
O21—N2—C2—C1−60.0 (15)C4—C5—C6—C11.2 (8)
D—H···AD—HH···AD···AD—H···A
O12—H12···N1A0.901.772.671 (4)180
N2A—H2A···O110.902.012.862 (4)158
N41A—H41A···O11Ai0.922.182.990 (3)147
N41A—H42A···O12Aii0.832.242.973 (3)146
C3—H3···O12Aiii0.932.543.289 (4)138
C21A—H21A···O12A0.932.552.915 (4)104
C31A—H31A···O11Ai0.932.493.250 (4)139
C51A—H51A···O12Aii0.932.573.230 (4)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O12—H12⋯N1A 0.901.772.671 (4)180
N2A—H2A⋯O110.902.012.862 (4)158
N41A—H41A⋯O11A i 0.922.182.990 (3)147
N41A—H42A⋯O12A ii 0.832.242.973 (3)146

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

Review 3.  Sulfa drugs as model cocrystal formers.

Authors:  Mino R Caira
Journal:  Mol Pharm       Date:  2007-05-04       Impact factor: 4.939

4.  4-Amino-N-(4,6-dimethyl-pyrimidin-2-yl)-benzene-sulfonamide-4-nitro-benzoic acid (1/1).

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  4-Amino-N-(4,6-di-methyl-pyrimidin-2-yl)benzene-sulfonamide-1,4-di-aza-bicyclo-[2.2.2]octane (2/1).

Authors:  Hadi D Arman; Trupta Kaulgud; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05

2.  Differences in Coformer Interactions of the 2,4-Diaminopyrimidines Pyrimethamine and Trimethoprim.

Authors:  Lamis Alaa Eldin Refat; Ciaran O'Malley; John M Simmie; Patrick McArdle; Andrea Erxleben
Journal:  Cryst Growth Des       Date:  2022-04-08       Impact factor: 4.010

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.