Literature DB >> 23424508

N-(5-Amino-1H-1,2,4-triazol-3-yl)pyridine-2-carboxamide.

Javier Hernández-Gil1, Sacramento Ferrer, Rafael Ballesteros, Alfonso Castiñeiras.   

Abstract

The title compound, C(8)H(8)N(6)O, was obtained by the reaction of 3,5-diamino-1,2,4-triazole with ethyl 2-picolinate in a glass oven. The dihedral angles formed between the plane of the amide group and the pyridine and triazole rings are 11.8 (3) and 5.8 (3)°, respectively. In the crystal, an extensive system of classical N-H⋯N and N-H⋯O hydrogen bonds generate an infinite three-dimensional network.

Entities:  

Year:  2013        PMID: 23424508      PMCID: PMC3569762          DOI: 10.1107/S1600536813000123

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to triazole derivatives, see: Aromí et al. (2011 ▶); Olguín et al. (2012 ▶). For related triazole structures, see: Allouch et al. (2008 ▶); Ouakkaf et al. (2011 ▶). For structures of metal complexes with related triazoles, see: Ferrer et al. (2004 ▶, 2012 ▶). For the synthesis of triazoles, see: Chernyshev et al. (2005 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H8N6O M = 204.20 Tetragonal, a = 9.5480 (5) Å c = 21.9570 (9) Å V = 2001.69 (17) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.15 × 0.09 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer 4484 measured reflections 1407 independent reflections 915 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.07 1407 reflections 137 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.13 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and DIAMOND (Brandenburg & Putz, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000123/gk2547sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000123/gk2547Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000123/gk2547Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8N6ODx = 1.355 Mg m3
Mr = 204.20Melting point: 494(1) K
Tetragonal, P41212Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 4abw 2nwCell parameters from 2353 reflections
a = 9.5480 (5) Åθ = 1.0–27.5°
c = 21.9570 (9) ŵ = 0.10 mm1
V = 2001.69 (17) Å3T = 293 K
Z = 8Prism, colourless
F(000) = 8480.15 × 0.09 × 0.05 mm
Nonius KappaCCD diffractometer915 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
Graphite monochromatorθmax = 27.5°, θmin = 2.3°
Detector resolution: 9 pixels mm-1h = −12→12
ω and phi scansk = −8→8
4484 measured reflectionsl = −28→27
1407 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0557P)2 + 0.0085P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
1407 reflectionsΔρmax = 0.12 e Å3
137 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.013 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O170.1793 (2)0.33529 (18)0.25244 (8)0.0726 (6)
N110.0462 (3)0.1210 (3)0.36912 (9)0.0708 (7)
N180.1596 (2)0.09855 (19)0.25946 (8)0.0513 (5)
H180.13990.03180.28430.062*
N200.2076 (2)−0.0746 (2)0.18712 (8)0.0495 (5)
N210.2450 (2)−0.0695 (2)0.12653 (8)0.0503 (5)
H210.2593−0.14120.10360.060*
N220.2887 (3)0.1049 (2)0.05253 (9)0.0797 (9)
H22A0.30460.04380.02460.096*
H22B0.29390.19280.04420.096*
N230.2279 (2)0.14920 (19)0.15549 (8)0.0543 (6)
C12−0.0006 (4)0.1273 (4)0.42633 (13)0.0885 (11)
H12−0.03870.04670.44340.106*
C130.0043 (4)0.2465 (4)0.46156 (14)0.0871 (10)
H13−0.02880.24600.50140.104*
C140.0583 (5)0.3637 (4)0.43690 (15)0.1011 (12)
H140.06270.44580.45960.121*
C150.1072 (4)0.3613 (3)0.37768 (13)0.0877 (11)
H150.14510.44120.35990.105*
C160.0983 (3)0.2377 (3)0.34567 (11)0.0585 (7)
C170.1488 (3)0.2302 (3)0.28160 (11)0.0541 (6)
C190.1992 (2)0.0590 (2)0.20093 (10)0.0463 (6)
C220.2557 (3)0.0633 (2)0.10904 (10)0.0503 (6)
U11U22U33U12U13U23
O170.1132 (17)0.0408 (10)0.0639 (11)−0.0008 (10)0.0054 (11)0.0032 (9)
N110.0937 (19)0.0633 (16)0.0552 (13)−0.0053 (13)0.0148 (12)−0.0079 (11)
N180.0701 (14)0.0370 (11)0.0468 (11)−0.0015 (10)0.0061 (10)−0.0016 (9)
N200.0677 (14)0.0356 (11)0.0453 (10)0.0003 (9)0.0062 (9)−0.0003 (9)
N210.0723 (14)0.0345 (11)0.0442 (10)0.0013 (10)0.0061 (9)−0.0020 (8)
N220.147 (3)0.0395 (13)0.0522 (13)0.0045 (14)0.0264 (15)0.0046 (10)
N230.0790 (15)0.0351 (10)0.0487 (11)−0.0009 (10)0.0068 (11)0.0014 (9)
C120.115 (3)0.085 (2)0.0647 (18)−0.010 (2)0.0275 (18)−0.0075 (17)
C130.104 (3)0.093 (3)0.0643 (18)0.014 (2)0.0149 (17)−0.0163 (19)
C140.148 (4)0.080 (3)0.076 (2)0.018 (3)0.009 (2)−0.033 (2)
C150.136 (3)0.0541 (19)0.073 (2)0.0064 (19)0.0134 (19)−0.0150 (16)
C160.0715 (18)0.0512 (17)0.0528 (14)0.0080 (13)0.0001 (12)−0.0059 (13)
C170.0664 (16)0.0402 (14)0.0558 (14)0.0025 (12)−0.0052 (12)−0.0005 (12)
C190.0576 (15)0.0364 (13)0.0448 (13)−0.0009 (11)0.0011 (11)0.0022 (10)
C220.0686 (17)0.0355 (13)0.0468 (13)−0.0007 (12)0.0043 (12)−0.0005 (11)
O17—C171.225 (3)N22—H22B0.8600
N11—C161.324 (3)N23—C221.335 (3)
N11—C121.335 (3)N23—C191.347 (3)
N18—C171.352 (3)C12—C131.377 (4)
N18—C191.392 (3)C12—H120.9300
N18—H180.8600C13—C141.346 (5)
N20—C191.314 (3)C13—H130.9300
N20—N211.378 (2)C14—C151.382 (4)
N21—C221.329 (3)C14—H140.9300
N21—H210.8600C15—C161.376 (4)
N22—C221.340 (3)C15—H150.9300
N22—H22A0.8600C16—C171.489 (3)
C16—N11—C12117.0 (2)C13—C14—C15119.6 (3)
C17—N18—C19127.3 (2)C13—C14—H14120.2
C17—N18—H18116.4C15—C14—H14120.2
C19—N18—H18116.3C16—C15—C14118.3 (3)
C19—N20—N21101.78 (18)C16—C15—H15120.9
C22—N21—N20109.41 (18)C14—C15—H15120.9
C22—N21—H21125.3N11—C16—C15123.1 (2)
N20—N21—H21125.3N11—C16—C17116.7 (2)
C22—N22—H22A120.0C15—C16—C17120.2 (3)
C22—N22—H22B120.0O17—C17—N18123.7 (2)
H22A—N22—H22B120.0O17—C17—C16122.1 (2)
C22—N23—C19102.32 (19)N18—C17—C16114.1 (2)
N11—C12—C13123.7 (3)N20—C19—N23116.0 (2)
N11—C12—H12118.1N20—C19—N18119.6 (2)
C13—C12—H12118.1N23—C19—N18124.4 (2)
C14—C13—C12118.3 (3)N21—C22—N23110.5 (2)
C14—C13—H13120.8N21—C22—N22124.6 (2)
C12—C13—H13120.8N23—C22—N22124.9 (2)
C19—N20—N21—C22−0.1 (3)N11—C16—C17—N18−12.1 (4)
C16—N11—C12—C13−0.8 (6)C15—C16—C17—N18167.8 (3)
N11—C12—C13—C140.6 (6)N21—N20—C19—N23−0.2 (3)
C12—C13—C14—C15−0.2 (6)N21—N20—C19—N18178.5 (2)
C13—C14—C15—C160.2 (5)C22—N23—C19—N200.5 (3)
C12—N11—C16—C150.8 (5)C22—N23—C19—N18−178.2 (2)
C12—N11—C16—C17−179.3 (3)C17—N18—C19—N20178.4 (2)
C14—C15—C16—N11−0.5 (5)C17—N18—C19—N23−3.0 (4)
C14—C15—C16—C17179.6 (3)N20—N21—C22—N230.4 (3)
C19—N18—C17—O17−3.3 (4)N20—N21—C22—N22−179.1 (3)
C19—N18—C17—C16177.7 (2)C19—N23—C22—N21−0.5 (3)
N11—C16—C17—O17168.9 (3)C19—N23—C22—N22179.0 (3)
C15—C16—C17—O17−11.3 (4)
D—H···AD—HH···AD···AD—H···A
N21—H21···N23i0.862.022.788 (3)149
N21—H21···O17i0.862.413.061 (3)133
N18—H18···N20ii0.862.453.253 (3)155
N22—H22A···O17i0.862.082.860 (3)150
N22—H22B···N20iii0.862.263.068 (3)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N21—H21⋯N23i 0.862.022.788 (3)149
N21—H21⋯O17i 0.862.413.061 (3)133
N18—H18⋯N20ii 0.862.453.253 (3)155
N22—H22A⋯O17i 0.862.082.860 (3)150
N22—H22B⋯N20iii 0.862.263.068 (3)157

Symmetry codes: (i) ; (ii) ; (iii) .

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