Literature DB >> 23424506

[(1R,3S)-2,2-Dichloro-3-(hy-droxy-meth-yl)cyclo-prop-yl]methanol.

Mohammed H Kailani1.   

Abstract

The title compound, C(5)H(8)Cl(2)O(2), represents a meso isomer crystallizing in a chiral space group with two mol-ecules per asymmetric unit. The mol-ecules form helical associates with a pitch of 6.31 Å along the a axis via O-H⋯O hydrogen bonds. The overall three-dimesional supra-molecular architecture is stabilized by C-Cl⋯O halogen bonding, with a Cl⋯O separation of 3.139 (3) Å and a C-Cl⋯O angle of 162.5 (2)°.

Entities:  

Year:  2013        PMID: 23424506      PMCID: PMC3569760          DOI: 10.1107/S1600536813000366

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on this class of compounds, see: Kean et al. (2012 ▶); Lenhardt et al. (2009 ▶). For one-handed helical chains caused by hydrogen bonds, see: Abe et al. (2012 ▶). For the preparation of this type of compound, see: Kailani et al. (2012 ▶); Pustovit et al. (1994 ▶).

Experimental

Crystal data

C5H8Cl2O2 M = 171.02 Orthorhombic, a = 6.3110 (13) Å b = 15.429 (3) Å c = 15.433 (3) Å V = 1502.7 (5) Å3 Z = 8 Mo Kα radiation μ = 0.79 mm−1 T = 293 K 0.2 × 0.1 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (COLLECT; Nonius, 2004 ▶) T min = 0.91, T max = 0.96 6911 measured reflections 2628 independent reflections 1969 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.085 S = 1.03 2627 reflections 181 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 1081 Friedel pairs Flack parameter: 0.03 (9) Data collection: COLLECT (Nonius, 2004 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813000366/ld2090sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813000366/ld2090Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813000366/ld2090Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8Cl2O2Dx = 1.512 Mg m3
Mr = 171.02Melting point = 346–347 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2370 reflections
a = 6.3110 (13) Åθ = 1.0–27.5°
b = 15.429 (3) ŵ = 0.79 mm1
c = 15.433 (3) ÅT = 293 K
V = 1502.7 (5) Å3Chunk, colorless
Z = 80.2 × 0.1 × 0.05 mm
F(000) = 704
Nonius KappaCCD diffractometer2628 independent reflections
Radiation source: fine-focus sealed tube1969 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 9 pixels mm-1θmax = 25.0°, θmin = 1.3°
CCD scansh = −7→6
Absorption correction: multi-scan (COLLECT; Nonius, 2004)k = −18→18
Tmin = 0.91, Tmax = 0.96l = −12→18
6911 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.038w = 1/[σ2(Fo2) + (0.0363P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.085(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.17 e Å3
2627 reflectionsΔρmin = −0.17 e Å3
181 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0080 (12)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1081 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.03 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl2B0.87935 (18)0.17519 (6)0.46132 (7)0.0716 (4)
Cl1B1.21060 (18)0.08413 (7)0.55235 (8)0.0763 (4)
Cl2A1.4218 (2)0.27973 (6)0.07758 (7)0.0795 (4)
Cl1A1.08097 (18)0.18830 (7)0.16287 (8)0.0769 (4)
O1B1.2516 (5)−0.04682 (18)0.3348 (2)0.0665 (8)
O1A1.0243 (5)0.40988 (19)0.28993 (19)0.0620 (8)
O2B0.7810 (5)−0.03519 (18)0.6574 (2)0.0690 (9)
C5B0.8709 (7)−0.0635 (2)0.5790 (2)0.0600 (11)
H5BA0.8091−0.11870.56250.072*
H5BB1.0222−0.07180.58640.072*
O2A1.5018 (5)0.08789 (19)0.2961 (2)0.0699 (9)
C5A1.4000 (7)0.1672 (2)0.3187 (2)0.0637 (11)
H5AA1.44960.18650.37500.076*
H5AB1.24810.15820.32230.076*
C3B0.8318 (6)0.0018 (2)0.5091 (2)0.0497 (9)
H3BA0.68230.01720.50150.060*
C4A1.1354 (6)0.3326 (2)0.3103 (3)0.0583 (11)
H4AA1.03820.28390.30780.070*
H4AB1.18970.33650.36890.070*
C4B1.1321 (7)−0.0657 (2)0.4107 (3)0.0626 (11)
H4BA1.2261−0.06670.46040.075*
H4BB1.0689−0.12270.40510.075*
C2B0.9584 (6)0.0010 (2)0.4257 (3)0.0529 (10)
H2BB0.87670.01590.37380.063*
C3A1.4473 (6)0.23491 (19)0.2521 (3)0.0548 (10)
H3AA1.59830.24320.23990.066*
C1A1.3052 (6)0.2518 (2)0.1778 (2)0.0507 (10)
C2A1.3162 (6)0.3166 (2)0.2490 (2)0.0524 (9)
H2AB1.39730.36880.23440.063*
C1B0.9818 (6)0.07341 (19)0.4897 (2)0.0486 (10)
H41.095 (6)0.448 (2)0.302 (2)0.047 (13)*
H30.859 (6)−0.054 (2)0.697 (3)0.060 (13)*
H21.424 (7)0.051 (2)0.310 (3)0.068 (15)*
H11.181 (6)−0.063 (2)0.292 (3)0.066 (14)*
U11U22U33U12U13U23
Cl2B0.0888 (8)0.0565 (5)0.0694 (7)0.0161 (6)0.0126 (7)0.0145 (5)
Cl1B0.0631 (7)0.0797 (6)0.0862 (9)−0.0072 (6)−0.0204 (7)−0.0111 (6)
Cl2A0.1087 (10)0.0682 (6)0.0617 (7)0.0140 (6)0.0250 (8)0.0129 (5)
Cl1A0.0669 (7)0.0800 (7)0.0837 (8)−0.0173 (6)−0.0128 (7)−0.0142 (6)
O1B0.068 (2)0.0746 (17)0.057 (2)−0.0007 (16)0.0102 (19)−0.0108 (16)
O1A0.0628 (19)0.0592 (18)0.064 (2)0.0011 (17)0.0012 (17)−0.0048 (14)
O2B0.085 (2)0.0726 (17)0.049 (2)0.0196 (17)0.0000 (19)0.0076 (15)
C5B0.072 (3)0.047 (2)0.061 (3)−0.0013 (19)0.006 (3)0.0043 (19)
O2A0.078 (2)0.0605 (18)0.071 (2)0.0117 (17)0.0192 (19)0.0079 (15)
C5A0.073 (3)0.070 (2)0.048 (3)0.016 (2)0.005 (3)0.0061 (19)
C3B0.043 (2)0.0554 (19)0.051 (2)0.0040 (17)−0.0057 (19)−0.0036 (18)
C4A0.069 (3)0.058 (2)0.048 (3)0.005 (2)0.003 (2)0.0028 (18)
C4B0.073 (3)0.057 (2)0.058 (3)0.007 (2)−0.003 (3)−0.0065 (19)
C2B0.052 (2)0.058 (2)0.049 (2)0.0065 (18)−0.001 (2)−0.0027 (17)
C3A0.047 (2)0.058 (2)0.059 (3)−0.0016 (19)0.005 (2)0.0018 (19)
C1A0.054 (2)0.053 (2)0.045 (2)−0.0014 (17)0.003 (2)0.0036 (18)
C2A0.060 (2)0.0474 (18)0.050 (2)−0.0061 (19)0.004 (2)−0.0014 (17)
C1B0.053 (2)0.0450 (19)0.048 (2)−0.0008 (17)0.0006 (19)0.0030 (16)
Cl2B—C1B1.754 (3)C5A—H5AB0.9700
Cl1B—C1B1.746 (4)C3B—C1B1.486 (5)
Cl2A—C1A1.767 (4)C3B—C2B1.515 (5)
Cl1A—C1A1.737 (4)C3B—H3BA0.9800
O1B—C4B1.423 (5)C4A—C2A1.502 (5)
O1B—H10.84 (4)C4A—H4AA0.9700
O1A—C4A1.419 (4)C4A—H4AB0.9700
O1A—H40.76 (3)C4B—C2B1.521 (5)
O2B—C5B1.407 (4)C4B—H4BA0.9700
O2B—H30.84 (4)C4B—H4BB0.9700
C5B—C3B1.497 (5)C2B—C1B1.499 (5)
C5B—H5BA0.9700C2B—H2BB0.9800
C5B—H5BB0.9700C3A—C1A1.478 (5)
O2A—C5A1.425 (4)C3A—C2A1.509 (5)
O2A—H20.78 (4)C3A—H3AA0.9800
C5A—C3A1.496 (5)C1A—C2A1.487 (5)
C5A—H5AA0.9700C2A—H2AB0.9800
C4B—O1B—H1108 (3)C2B—C4B—H4BB109.3
C4A—O1A—H4108 (3)H4BA—C4B—H4BB108.0
C5B—O2B—H3107 (3)C1B—C2B—C3B59.1 (2)
O2B—C5B—C3B110.2 (3)C1B—C2B—C4B122.2 (3)
O2B—C5B—H5BA109.6C3B—C2B—C4B121.0 (3)
C3B—C5B—H5BA109.6C1B—C2B—H2BB114.5
O2B—C5B—H5BB109.6C3B—C2B—H2BB114.5
C3B—C5B—H5BB109.6C4B—C2B—H2BB114.5
H5BA—C5B—H5BB108.1C1A—C3A—C5A122.3 (3)
C5A—O2A—H2106 (3)C1A—C3A—C2A59.7 (2)
O2A—C5A—C3A110.0 (3)C5A—C3A—C2A119.7 (3)
O2A—C5A—H5AA109.7C1A—C3A—H3AA114.7
C3A—C5A—H5AA109.7C5A—C3A—H3AA114.7
O2A—C5A—H5AB109.7C2A—C3A—H3AA114.7
C3A—C5A—H5AB109.7C3A—C1A—C2A61.2 (2)
H5AA—C5A—H5AB108.2C3A—C1A—Cl1A119.9 (3)
C1B—C3B—C5B122.8 (3)C2A—C1A—Cl1A121.1 (3)
C1B—C3B—C2B59.9 (2)C3A—C1A—Cl2A118.0 (3)
C5B—C3B—C2B121.3 (3)C2A—C1A—Cl2A117.6 (2)
C1B—C3B—H3BA114.1Cl1A—C1A—Cl2A111.1 (2)
C5B—C3B—H3BA114.1C1A—C2A—C4A122.6 (3)
C2B—C3B—H3BA114.1C1A—C2A—C3A59.1 (2)
O1A—C4A—C2A112.0 (3)C4A—C2A—C3A122.3 (3)
O1A—C4A—H4AA109.2C1A—C2A—H2AB114.0
C2A—C4A—H4AA109.2C4A—C2A—H2AB114.0
O1A—C4A—H4AB109.2C3A—C2A—H2AB114.0
C2A—C4A—H4AB109.2C3B—C1B—C2B61.0 (2)
H4AA—C4A—H4AB107.9C3B—C1B—Cl1B119.1 (3)
O1B—C4B—C2B111.6 (3)C2B—C1B—Cl1B121.1 (3)
O1B—C4B—H4BA109.3C3B—C1B—Cl2B118.8 (3)
C2B—C4B—H4BA109.3C2B—C1B—Cl2B117.8 (3)
O1B—C4B—H4BB109.3Cl1B—C1B—Cl2B111.00 (18)
O2B—C5B—C3B—C1B90.9 (4)Cl1A—C1A—C2A—C3A109.4 (3)
O2B—C5B—C3B—C2B163.1 (3)Cl2A—C1A—C2A—C3A−108.5 (3)
C5B—C3B—C2B—C1B−112.3 (4)O1A—C4A—C2A—C1A−103.1 (4)
C1B—C3B—C2B—C4B111.4 (4)O1A—C4A—C2A—C3A−174.7 (3)
C5B—C3B—C2B—C4B−0.9 (5)C5A—C3A—C2A—C1A−112.3 (4)
O1B—C4B—C2B—C1B−100.3 (4)C1A—C3A—C2A—C4A111.5 (4)
O1B—C4B—C2B—C3B−171.0 (3)C5A—C3A—C2A—C4A−0.8 (6)
O2A—C5A—C3A—C1A93.8 (4)C5B—C3B—C1B—C2B110.0 (4)
O2A—C5A—C3A—C2A164.8 (3)C5B—C3B—C1B—Cl1B−1.6 (5)
C5A—C3A—C1A—C2A108.1 (4)C2B—C3B—C1B—Cl1B−111.6 (3)
C5A—C3A—C1A—Cl1A−3.2 (5)C5B—C3B—C1B—Cl2B−142.3 (3)
C2A—C3A—C1A—Cl1A−111.3 (3)C2B—C3B—C1B—Cl2B107.7 (3)
C5A—C3A—C1A—Cl2A−144.1 (3)C4B—C2B—C1B—C3B−109.4 (4)
C2A—C3A—C1A—Cl2A107.8 (3)C3B—C2B—C1B—Cl1B108.3 (3)
C3A—C1A—C2A—C4A−110.8 (4)C4B—C2B—C1B—Cl1B−1.0 (5)
Cl1A—C1A—C2A—C4A−1.4 (5)C3B—C2B—C1B—Cl2B−109.3 (3)
Cl2A—C1A—C2A—C4A140.7 (3)C4B—C2B—C1B—Cl2B141.4 (3)
D—H···AD—HH···AD···AD—H···A
O1A—H4···O2Bi0.76 (3)1.89 (3)2.650 (4)174 (4)
O2B—H3···O2Aii0.84 (4)1.84 (4)2.668 (4)171 (4)
O2A—H2···O1B0.78 (4)1.90 (4)2.678 (4)174 (4)
O1B—H1···O1Aiii0.84 (4)1.86 (4)2.680 (5)167 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1A—H4⋯O2B i 0.76 (3)1.89 (3)2.650 (4)174 (4)
O2B—H3⋯O2A ii 0.84 (4)1.84 (4)2.668 (4)171 (4)
O2A—H2⋯O1B 0.78 (4)1.90 (4)2.678 (4)174 (4)
O1B—H1⋯O1A iii 0.84 (4)1.86 (4)2.680 (5)167 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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