Literature DB >> 23424473

3-[2-Cyclo-propyl-1-(2-fluoro-phen-yl)-2-oxoeth-yl]-5-(4-methyl-sulfanyl-benzyl-idene)-1,3-thia-zolidine-2,4-dione.

J Suresh1, M Venkateshan, S Ponnuchamy, R Ranjith Kumar, P L Nilantha Lakshman.   

Abstract

In the title compound, C(22)H(18)FNO(3)S(2), the five-membered thia-zolidine ring is planar (r.m.s. deviation = 0.003 Å) and forms dihedral angles of 70.2 (3), 73.16 (17) and 10.32 (14)° with the cyclo-propane, fluoro-benzene and methyl-thio-benzene rings, respectively. The sum of the bond angles around the thia-zolidine ring N atom (359.6°) indicates sp(2) hybridization. The mol-ecular structure features intra-molecular C-H⋯S, C-H⋯F and C-H⋯O inter-actions. In the crystal, no significant inter-molecular contacts were apparent.

Entities:  

Year:  2013        PMID: 23424473      PMCID: PMC3569250          DOI: 10.1107/S1600536812051987

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general properties of thia­zolidines, see: Botti et al. (1996 ▶); Spiegelman (1998 ▶); Day (1999 ▶); Barreca et al. (2002 ▶).

Experimental

Crystal data

<span class="Chemical">C22H18FNO3S2 M = 427.49 Monoclinic, a = 7.657 (3) Å b = 15.799 (5) Å c = 17.425 (6) Å β = 95.641 (5)° V = 2097.7 (13) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.23 × 0.21 × 0.19 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.967, T max = 0.974 19651 measured reflections 3838 independent reflections 2429 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.149 S = 1.02 3838 reflections 262 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.26 e Å−3 Data collection: <span class="Gene">APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (<span class="Chemical">Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812051987/tk5185sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051987/tk5185Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051987/tk5185Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H18FNO3S2F(000) = 888
Mr = 427.49Dx = 1.354 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2000 reflections
a = 7.657 (3) Åθ = 2–25°
b = 15.799 (5) ŵ = 0.29 mm1
c = 17.425 (6) ÅT = 293 K
β = 95.641 (5)°Block, colourless
V = 2097.7 (13) Å30.23 × 0.21 × 0.19 mm
Z = 4
Bruker Kappa APEXII diffractometer3838 independent reflections
Radiation source: fine-focus sealed tube2429 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
Detector resolution: 0 pixels mm-1θmax = 25.4°, θmin = 2.4°
ω and φ scansh = −5→9
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −18→19
Tmin = 0.967, Tmax = 0.974l = −21→20
19651 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0683P)2 + 0.8976P] where P = (Fo2 + 2Fc2)/3
3838 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.0768 (4)0.07851 (19)0.35525 (16)0.0603 (7)
C20.2318 (3)0.02818 (18)0.34213 (15)0.0539 (7)
C30.1614 (4)0.08537 (18)0.28013 (16)0.0589 (7)
C4−0.1107 (4)0.16162 (18)0.23261 (15)0.0575 (7)
H4−0.02730.18110.19720.069*
C5−0.2414 (4)0.1066 (2)0.18456 (17)0.0648 (8)
C6−0.3427 (4)0.1473 (2)0.11919 (18)0.0769 (9)
H6−0.33140.20890.11510.092*
C7−0.5155 (5)0.1103 (3)0.0911 (2)0.1003 (13)
H7A−0.55470.06110.11810.120*
H7B−0.60820.14890.07190.120*
C8−0.3702 (6)0.0993 (3)0.0454 (2)0.1102 (14)
H8A−0.37200.1311−0.00230.132*
H8B−0.31850.04330.04390.132*
C9−0.1842 (4)0.24062 (19)0.26535 (16)0.0640 (8)
C10−0.3536 (5)0.2472 (2)0.28457 (19)0.0892 (11)
H10−0.43070.20190.27660.107*
C11−0.4098 (8)0.3236 (4)0.3166 (2)0.1203 (18)
H11−0.52410.32960.32950.144*
C12−0.2909 (11)0.3889 (3)0.3283 (3)0.137 (3)
H12−0.32570.43850.35110.164*
C13−0.1253 (10)0.3835 (3)0.3079 (3)0.131 (2)
H13−0.04950.42950.31440.157*
C14−0.0726 (6)0.3109 (2)0.27810 (19)0.0832 (10)
C150.3898 (3)−0.00777 (18)0.34052 (16)0.0566 (7)
H150.45070.00930.29960.068*
C160.4815 (3)−0.06842 (17)0.39142 (15)0.0523 (6)
C170.4287 (4)−0.09486 (18)0.46215 (16)0.0589 (7)
H170.3247−0.07410.47820.071*
C180.5269 (4)−0.15058 (19)0.50819 (16)0.0605 (7)
H180.4890−0.16710.55500.073*
C190.6831 (4)−0.18290 (19)0.48574 (16)0.0611 (7)
C200.7347 (4)−0.1587 (2)0.41522 (17)0.0677 (8)
H200.8375−0.18040.39870.081*
C210.6358 (3)−0.10303 (19)0.36966 (16)0.0609 (7)
H210.6730−0.08770.32240.073*
C220.9974 (6)−0.2703 (4)0.5069 (3)0.142 (2)
H22A1.0729−0.30670.53940.212*
H22B1.0571−0.21800.49900.212*
H22C0.9670−0.29740.45810.212*
N−0.0076 (3)0.11071 (14)0.29086 (12)0.0543 (6)
O1−0.2202 (3)0.09354 (14)0.37424 (13)0.0807 (7)
O20.2345 (3)0.10769 (15)0.22512 (13)0.0868 (7)
O3−0.2558 (4)0.03221 (15)0.19915 (15)0.0952 (8)
F0.0895 (4)0.30462 (16)0.25692 (14)0.1184 (8)
S10.07690 (9)0.01156 (5)0.40749 (4)0.0652 (3)
S20.80371 (12)−0.24929 (6)0.55177 (5)0.0834 (3)
U11U22U33U12U13U23
C10.0589 (16)0.0646 (18)0.0587 (18)0.0013 (14)0.0130 (14)0.0060 (15)
C20.0573 (15)0.0623 (17)0.0433 (15)−0.0036 (13)0.0116 (12)−0.0021 (13)
C30.0620 (16)0.0637 (18)0.0523 (17)0.0018 (14)0.0132 (14)0.0010 (14)
C40.0649 (16)0.0608 (18)0.0476 (16)0.0013 (14)0.0102 (13)0.0069 (14)
C50.0770 (19)0.062 (2)0.0559 (18)0.0030 (16)0.0072 (15)0.0013 (15)
C60.094 (2)0.079 (2)0.0565 (19)−0.0150 (18)−0.0036 (17)0.0109 (17)
C70.086 (2)0.123 (3)0.089 (3)−0.018 (2)−0.004 (2)0.033 (2)
C80.122 (3)0.153 (4)0.054 (2)−0.023 (3)0.002 (2)−0.007 (2)
C90.091 (2)0.0552 (19)0.0455 (16)0.0119 (17)0.0063 (15)0.0055 (14)
C100.113 (3)0.092 (3)0.065 (2)0.044 (2)0.022 (2)0.0144 (19)
C110.163 (4)0.132 (4)0.071 (3)0.078 (4)0.034 (3)0.033 (3)
C120.263 (8)0.078 (3)0.070 (3)0.063 (5)0.022 (4)0.011 (3)
C130.257 (7)0.064 (3)0.068 (3)−0.001 (4)−0.005 (4)0.008 (2)
C140.134 (3)0.063 (2)0.0523 (19)0.007 (2)0.007 (2)0.0114 (17)
C150.0565 (15)0.0679 (18)0.0470 (16)−0.0024 (14)0.0129 (12)−0.0016 (14)
C160.0510 (14)0.0604 (17)0.0456 (15)−0.0017 (13)0.0055 (12)−0.0055 (13)
C170.0545 (15)0.0688 (19)0.0547 (17)0.0030 (14)0.0121 (13)−0.0046 (14)
C180.0659 (17)0.0689 (19)0.0475 (16)0.0000 (15)0.0087 (14)−0.0011 (14)
C190.0616 (16)0.0678 (19)0.0524 (18)0.0053 (14)−0.0018 (14)−0.0051 (14)
C200.0572 (16)0.088 (2)0.0592 (18)0.0125 (16)0.0126 (14)−0.0009 (17)
C210.0596 (16)0.077 (2)0.0477 (16)0.0033 (15)0.0133 (13)0.0007 (15)
C220.106 (3)0.218 (6)0.103 (3)0.088 (3)0.020 (3)0.042 (3)
N0.0560 (12)0.0618 (14)0.0459 (13)0.0031 (11)0.0089 (10)0.0055 (11)
O10.0627 (12)0.0963 (17)0.0874 (16)0.0178 (11)0.0300 (11)0.0260 (13)
O20.0850 (14)0.1093 (18)0.0723 (14)0.0220 (13)0.0382 (12)0.0331 (13)
O30.127 (2)0.0603 (15)0.0921 (18)−0.0026 (14)−0.0193 (15)0.0020 (13)
F0.134 (2)0.1123 (19)0.1068 (18)−0.0420 (16)0.0020 (15)0.0186 (14)
S10.0581 (4)0.0814 (6)0.0582 (5)0.0072 (4)0.0169 (3)0.0164 (4)
S20.0848 (6)0.1018 (7)0.0621 (5)0.0229 (5)−0.0005 (4)0.0087 (5)
C1—O11.201 (3)C10—H100.9300
C1—N1.384 (3)C11—C121.378 (8)
C1—S11.767 (3)C11—H110.9300
C2—C151.340 (4)C12—C131.353 (8)
C2—C31.470 (4)C12—H120.9300
C2—S11.743 (3)C13—C141.337 (6)
C3—O21.209 (3)C13—H130.9300
C3—N1.385 (3)C14—F1.333 (4)
C4—N1.464 (3)C15—C161.441 (4)
C4—C91.504 (4)C15—H150.9300
C4—C51.515 (4)C16—C211.388 (4)
C4—H40.9800C16—C171.398 (4)
C5—O31.209 (4)C17—C181.366 (4)
C5—C61.463 (4)C17—H170.9300
C6—C71.486 (5)C18—C191.391 (4)
C6—C81.490 (5)C18—H180.9300
C6—H60.9800C19—C201.381 (4)
C7—C81.441 (5)C19—S21.752 (3)
C7—H7A0.9700C20—C211.363 (4)
C7—H7B0.9700C20—H200.9300
C8—H8A0.9700C21—H210.9300
C8—H8B0.9700C22—S21.774 (4)
C9—C101.375 (5)C22—H22A0.9600
C9—C141.406 (5)C22—H22B0.9600
C10—C111.413 (6)C22—H22C0.9600
O1—C1—N125.7 (3)C12—C11—H11120.8
O1—C1—S1123.8 (2)C10—C11—H11120.8
N—C1—S1110.43 (19)C13—C12—C11122.5 (5)
C15—C2—C3120.8 (2)C13—C12—H12118.8
C15—C2—S1128.6 (2)C11—C12—H12118.8
C3—C2—S1110.44 (19)C14—C13—C12118.9 (6)
O2—C3—N122.3 (3)C14—C13—H13120.6
O2—C3—C2126.7 (3)C12—C13—H13120.6
N—C3—C2111.0 (2)F—C14—C13119.7 (5)
N—C4—C9112.9 (2)F—C14—C9117.8 (3)
N—C4—C5110.5 (2)C13—C14—C9122.5 (5)
C9—C4—C5115.8 (2)C2—C15—C16131.0 (3)
N—C4—H4105.6C2—C15—H15114.5
C9—C4—H4105.6C16—C15—H15114.5
C5—C4—H4105.6C21—C16—C17116.8 (3)
O3—C5—C6122.6 (3)C21—C16—C15118.1 (2)
O3—C5—C4120.7 (3)C17—C16—C15125.2 (2)
C6—C5—C4116.6 (3)C18—C17—C16121.4 (3)
C5—C6—C7118.0 (3)C18—C17—H17119.3
C5—C6—C8117.8 (3)C16—C17—H17119.3
C7—C6—C857.9 (2)C17—C18—C19120.7 (3)
C5—C6—H6116.7C17—C18—H18119.7
C7—C6—H6116.7C19—C18—H18119.7
C8—C6—H6116.7C20—C19—C18118.5 (3)
C8—C7—C661.2 (2)C20—C19—S2124.9 (2)
C8—C7—H7A117.6C18—C19—S2116.6 (2)
C6—C7—H7A117.6C21—C20—C19120.4 (3)
C8—C7—H7B117.6C21—C20—H20119.8
C6—C7—H7B117.6C19—C20—H20119.8
H7A—C7—H7B114.8C20—C21—C16122.3 (3)
C7—C8—C660.9 (2)C20—C21—H21118.9
C7—C8—H8A117.7C16—C21—H21118.9
C6—C8—H8A117.7S2—C22—H22A109.5
C7—C8—H8B117.7S2—C22—H22B109.5
C6—C8—H8B117.7H22A—C22—H22B109.5
H8A—C8—H8B114.8S2—C22—H22C109.5
C10—C9—C14118.4 (3)H22A—C22—H22C109.5
C10—C9—C4123.5 (3)H22B—C22—H22C109.5
C14—C9—C4118.1 (3)C1—N—C3116.1 (2)
C9—C10—C11119.5 (4)C1—N—C4122.7 (2)
C9—C10—H10120.3C3—N—C4120.8 (2)
C11—C10—H10120.3C2—S1—C191.99 (13)
C12—C11—C10118.4 (5)C19—S2—C22103.42 (18)
C15—C2—C3—O2−2.4 (5)C2—C15—C16—C21171.7 (3)
S1—C2—C3—O2−178.1 (3)C2—C15—C16—C17−9.2 (5)
C15—C2—C3—N176.1 (2)C21—C16—C17—C181.5 (4)
S1—C2—C3—N0.4 (3)C15—C16—C17—C18−177.7 (3)
N—C4—C5—O33.6 (4)C16—C17—C18—C19−0.1 (4)
C9—C4—C5—O3−126.4 (3)C17—C18—C19—C20−1.2 (4)
N—C4—C5—C6−174.5 (2)C17—C18—C19—S2176.6 (2)
C9—C4—C5—C655.6 (4)C18—C19—C20—C211.2 (5)
O3—C5—C6—C726.8 (5)S2—C19—C20—C21−176.4 (2)
C4—C5—C6—C7−155.3 (3)C19—C20—C21—C160.2 (5)
O3—C5—C6—C8−39.7 (5)C17—C16—C21—C20−1.5 (4)
C4—C5—C6—C8138.3 (3)C15—C16—C21—C20177.7 (3)
C5—C6—C7—C8−106.9 (4)O1—C1—N—C3179.6 (3)
C5—C6—C8—C7107.2 (4)S1—C1—N—C30.0 (3)
N—C4—C9—C10−98.6 (3)O1—C1—N—C4−6.4 (5)
C5—C4—C9—C1030.1 (4)S1—C1—N—C4174.0 (2)
N—C4—C9—C1480.3 (3)O2—C3—N—C1178.3 (3)
C5—C4—C9—C14−151.0 (3)C2—C3—N—C1−0.3 (3)
C14—C9—C10—C11−0.3 (5)O2—C3—N—C44.2 (4)
C4—C9—C10—C11178.6 (3)C2—C3—N—C4−174.3 (2)
C9—C10—C11—C12−0.7 (6)C9—C4—N—C158.9 (3)
C10—C11—C12—C132.3 (7)C5—C4—N—C1−72.5 (3)
C11—C12—C13—C14−2.8 (8)C9—C4—N—C3−127.4 (3)
C12—C13—C14—F179.3 (4)C5—C4—N—C3101.1 (3)
C12—C13—C14—C91.7 (6)C15—C2—S1—C1−175.6 (3)
C10—C9—C14—F−177.9 (3)C3—C2—S1—C1−0.3 (2)
C4—C9—C14—F3.1 (4)O1—C1—S1—C2−179.4 (3)
C10—C9—C14—C13−0.2 (5)N—C1—S1—C20.2 (2)
C4—C9—C14—C13−179.2 (3)C20—C19—S2—C222.2 (4)
C3—C2—C15—C16−176.3 (3)C18—C19—S2—C22−175.6 (3)
S1—C2—C15—C16−1.4 (5)
D—H···AD—HH···AD···AD—H···A
C4—H4···F0.982.352.740 (4)103
C4—H4···O20.982.332.792 (4)108
C15—H15···O20.932.532.884 (4)103
C17—H17···S10.932.553.238 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯F0.982.352.740 (4)103
C4—H4⋯O20.982.332.792 (4)108
C15—H15⋯O20.932.532.884 (4)103
C17—H17⋯S10.932.553.238 (3)131
  5 in total

Review 1.  Thiazolidinediones: a new class of antidiabetic drugs.

Authors:  C Day
Journal:  Diabet Med       Date:  1999-03       Impact factor: 4.359

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  PPAR-gamma: adipogenic regulator and thiazolidinedione receptor.

Authors:  B M Spiegelman
Journal:  Diabetes       Date:  1998-04       Impact factor: 9.461

4.  Design, synthesis, structure-activity relationships, and molecular modeling studies of 2,3-diaryl-1,3-thiazolidin-4-ones as potent anti-HIV agents.

Authors:  Maria L Barreca; Jan Balzarini; Alba Chimirri; Erik De Clercq; Laura De Luca; Hans Dieter Höltje; Monika Höltje; Anna Maria Monforte; Pietro Monforte; Christophe Pannecouque; Angela Rao; Maria Zappalà
Journal:  J Med Chem       Date:  2002-11-21       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.