| Literature DB >> 23424472 |
Galal H Elgemeie1, Shahinaz H Sayed, Peter G Jones.
Abstract
The mol-ecule of the title compound, C(9)H(9)N(5)O, is essentially planar (r.m.s. deviation of all atoms = 0.02 Å) except for theEntities:
Year: 2013 PMID: 23424472 PMCID: PMC3569249 DOI: 10.1107/S1600536812050854
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N5O | |
| Monoclinic, | Melting point: 518 K |
| Hall symbol: -P 2ybc | Cu |
| Cell parameters from 18413 reflections | |
| θ = 3.3–75.6° | |
| µ = 0.86 mm−1 | |
| β = 103.094 (3)° | |
| Tablet, orange-brown | |
| 0.15 × 0.10 × 0.03 mm |
| Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer | 1914 independent reflections |
| Radiation source: Nova (Cu) X-ray Source | 1807 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.3543 pixels mm-1 | θmax = 75.8°, θmin = 5.5° |
| ω–scan | |
| Absorption correction: multi-scan ( | |
| 26682 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1914 reflections | (Δ/σ)max < 0.001 |
| 152 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Least-squares planes ( |
| Refinement. Refinement of |
| O1 | 0.09284 (11) | 0.44649 (5) | 0.17545 (7) | 0.02234 (19) | |
| N1 | 0.06030 (14) | 0.60858 (6) | 0.09217 (8) | 0.0210 (2) | |
| H01 | 0.008 (2) | 0.5972 (11) | 0.0053 (16) | 0.036 (4)* | |
| N2 | 0.08679 (13) | 0.70841 (6) | 0.13887 (8) | 0.0210 (2) | |
| C3 | 0.15061 (15) | 0.70044 (7) | 0.26628 (10) | 0.0188 (2) | |
| C4 | 0.16773 (15) | 0.59729 (7) | 0.30772 (10) | 0.0182 (2) | |
| C5 | 0.10365 (15) | 0.53946 (8) | 0.18664 (9) | 0.0190 (2) | |
| N3 | 0.19896 (14) | 0.77858 (7) | 0.35089 (9) | 0.0230 (2) | |
| H03B | 0.202 (2) | 0.7633 (12) | 0.4385 (16) | 0.041 (4)* | |
| H03A | 0.135 (2) | 0.8364 (12) | 0.3206 (15) | 0.036 (4)* | |
| N4 | 0.22316 (12) | 0.56774 (6) | 0.42917 (8) | 0.0180 (2) | |
| N5 | 0.22648 (13) | 0.47167 (6) | 0.45303 (8) | 0.0193 (2) | |
| H05 | 0.189 (2) | 0.4280 (12) | 0.3870 (15) | 0.034 (4)* | |
| C11 | 0.28700 (14) | 0.43692 (8) | 0.58298 (10) | 0.0190 (2) | |
| C12 | 0.28637 (16) | 0.33470 (8) | 0.60446 (11) | 0.0229 (2) | |
| H12 | 0.2442 | 0.2901 | 0.5329 | 0.028* | |
| C13 | 0.34813 (16) | 0.29858 (8) | 0.73178 (11) | 0.0268 (3) | |
| H13 | 0.3487 | 0.2289 | 0.7473 | 0.032* | |
| C14 | 0.40897 (16) | 0.36360 (9) | 0.83626 (11) | 0.0283 (3) | |
| H14 | 0.4516 | 0.3386 | 0.9232 | 0.034* | |
| C15 | 0.40732 (17) | 0.46548 (9) | 0.81331 (10) | 0.0271 (3) | |
| H15 | 0.4484 | 0.5099 | 0.8851 | 0.033* | |
| C16 | 0.34645 (16) | 0.50330 (8) | 0.68682 (10) | 0.0223 (2) | |
| H16 | 0.3454 | 0.5730 | 0.6715 | 0.027* |
| O1 | 0.0293 (4) | 0.0182 (4) | 0.0181 (4) | −0.0032 (3) | 0.0024 (3) | −0.0003 (3) |
| N1 | 0.0273 (5) | 0.0194 (4) | 0.0149 (4) | −0.0021 (3) | 0.0018 (3) | 0.0002 (3) |
| N2 | 0.0249 (4) | 0.0182 (4) | 0.0193 (4) | −0.0005 (3) | 0.0038 (3) | 0.0006 (3) |
| C3 | 0.0188 (5) | 0.0190 (5) | 0.0189 (5) | 0.0015 (4) | 0.0045 (4) | 0.0008 (4) |
| C4 | 0.0188 (5) | 0.0189 (5) | 0.0166 (5) | 0.0006 (4) | 0.0036 (4) | −0.0002 (4) |
| C5 | 0.0199 (5) | 0.0205 (5) | 0.0164 (5) | −0.0012 (4) | 0.0038 (4) | 0.0008 (4) |
| N3 | 0.0310 (5) | 0.0173 (4) | 0.0199 (4) | 0.0032 (4) | 0.0042 (4) | −0.0004 (3) |
| N4 | 0.0190 (4) | 0.0179 (4) | 0.0172 (4) | 0.0019 (3) | 0.0042 (3) | 0.0012 (3) |
| N5 | 0.0237 (4) | 0.0178 (4) | 0.0155 (4) | 0.0001 (3) | 0.0028 (3) | −0.0002 (3) |
| C11 | 0.0170 (4) | 0.0228 (5) | 0.0170 (5) | 0.0015 (4) | 0.0039 (4) | 0.0034 (4) |
| C12 | 0.0216 (5) | 0.0225 (5) | 0.0246 (5) | 0.0002 (4) | 0.0049 (4) | 0.0016 (4) |
| C13 | 0.0229 (5) | 0.0262 (6) | 0.0316 (6) | 0.0021 (4) | 0.0071 (4) | 0.0107 (4) |
| C14 | 0.0239 (5) | 0.0384 (7) | 0.0220 (5) | 0.0025 (5) | 0.0040 (4) | 0.0111 (5) |
| C15 | 0.0272 (5) | 0.0360 (6) | 0.0175 (5) | −0.0002 (5) | 0.0034 (4) | 0.0008 (4) |
| C16 | 0.0238 (5) | 0.0242 (5) | 0.0188 (5) | 0.0006 (4) | 0.0045 (4) | 0.0010 (4) |
| O1—C5 | 1.2548 (13) | C13—C14 | 1.3861 (17) |
| N1—C5 | 1.3387 (13) | C14—C15 | 1.3890 (17) |
| N1—N2 | 1.4242 (12) | C15—C16 | 1.3891 (15) |
| N2—C3 | 1.3083 (13) | N1—H01 | 0.909 (16) |
| C3—N3 | 1.3637 (13) | N3—H03B | 0.934 (17) |
| C3—C4 | 1.4484 (13) | N3—H03A | 0.908 (16) |
| C4—N4 | 1.3019 (13) | N5—H05 | 0.897 (16) |
| C4—C5 | 1.4645 (13) | C12—H12 | 0.9500 |
| N4—N5 | 1.3134 (12) | C13—H13 | 0.9500 |
| N5—C11 | 1.4069 (13) | C14—H14 | 0.9500 |
| C11—C12 | 1.3914 (15) | C15—H15 | 0.9500 |
| C11—C16 | 1.3918 (15) | C16—H16 | 0.9500 |
| C12—C13 | 1.3892 (15) | ||
| C5—N1—N2 | 114.23 (8) | C14—C15—C16 | 120.92 (10) |
| C3—N2—N1 | 105.00 (8) | C15—C16—C11 | 118.64 (10) |
| N2—C3—N3 | 124.94 (9) | C5—N1—H01 | 126.2 (10) |
| N2—C3—C4 | 111.62 (9) | N2—N1—H01 | 119.4 (10) |
| N3—C3—C4 | 123.43 (9) | C3—N3—H03B | 114.5 (10) |
| N4—C4—C3 | 124.69 (9) | C3—N3—H03A | 114.0 (9) |
| N4—C4—C5 | 130.16 (9) | H03B—N3—H03A | 115.7 (14) |
| C3—C4—C5 | 105.11 (8) | N4—N5—H05 | 120.4 (10) |
| O1—C5—N1 | 128.54 (9) | C11—N5—H05 | 119.7 (10) |
| O1—C5—C4 | 127.43 (9) | C13—C12—H12 | 120.4 |
| N1—C5—C4 | 104.03 (9) | C11—C12—H12 | 120.4 |
| C4—N4—N5 | 118.26 (9) | C14—C13—H13 | 119.8 |
| N4—N5—C11 | 119.87 (8) | C12—C13—H13 | 119.8 |
| C12—C11—C16 | 121.13 (9) | C13—C14—H14 | 120.2 |
| C12—C11—N5 | 118.19 (9) | C15—C14—H14 | 120.2 |
| C16—C11—N5 | 120.67 (9) | C14—C15—H15 | 119.5 |
| C13—C12—C11 | 119.21 (10) | C16—C15—H15 | 119.5 |
| C14—C13—C12 | 120.42 (10) | C15—C16—H16 | 120.7 |
| C13—C14—C15 | 119.68 (10) | C11—C16—H16 | 120.7 |
| C5—N1—N2—C3 | 0.65 (12) | C3—C4—N4—N5 | 178.06 (9) |
| N1—N2—C3—N3 | 178.81 (9) | C5—C4—N4—N5 | 0.52 (16) |
| N1—N2—C3—C4 | −0.17 (11) | C4—N4—N5—C11 | 179.53 (9) |
| N2—C3—C4—N4 | −178.34 (9) | N4—N5—C11—C12 | 179.30 (8) |
| N3—C3—C4—N4 | 2.66 (16) | N4—N5—C11—C16 | −0.93 (14) |
| N2—C3—C4—C5 | −0.29 (12) | C16—C11—C12—C13 | −0.62 (15) |
| N3—C3—C4—C5 | −179.29 (9) | N5—C11—C12—C13 | 179.15 (9) |
| N2—N1—C5—O1 | 179.27 (9) | C11—C12—C13—C14 | 0.23 (16) |
| N2—N1—C5—C4 | −0.81 (11) | C12—C13—C14—C15 | 0.24 (16) |
| N4—C4—C5—O1 | −1.54 (18) | C13—C14—C15—C16 | −0.33 (17) |
| C3—C4—C5—O1 | −179.44 (10) | C14—C15—C16—C11 | −0.05 (16) |
| N4—C4—C5—N1 | 178.55 (10) | C12—C11—C16—C15 | 0.53 (15) |
| C3—C4—C5—N1 | 0.65 (10) | N5—C11—C16—C15 | −179.24 (9) |
| H··· | ||||
| N1—H01···O1i | 0.909 (16) | 1.949 (16) | 2.8521 (11) | 172.0 (14) |
| N3—H03 | 0.934 (17) | 2.424 (16) | 3.2711 (12) | 150.8 (13) |
| N3—H03 | 0.908 (16) | 2.141 (15) | 2.9635 (11) | 150.2 (13) |
| N3—H03 | 0.934 (17) | 2.674 (16) | 3.2562 (13) | 121.1 (12) |
| N5—H05···O1 | 0.897 (16) | 2.174 (16) | 2.8575 (11) | 132.5 (13) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H01⋯O1i | 0.909 (16) | 1.949 (16) | 2.8521 (11) | 172.0 (14) |
| N3—H03 | 0.934 (17) | 2.424 (16) | 3.2711 (12) | 150.8 (13) |
| N3—H03 | 0.908 (16) | 2.141 (15) | 2.9635 (11) | 150.2 (13) |
| N5—H05⋯O1 | 0.897 (16) | 2.174 (16) | 2.8575 (11) | 132.5 (13) |
Symmetry codes: (i) ; (ii) ; (iii) .