Literature DB >> 23424472

(E)-3-Amino-4-(2-phenyl-hydrazinyl-idene)-1H-pyrazol-5(4H)-one.

Galal H Elgemeie1, Shahinaz H Sayed, Peter G Jones.   

Abstract

The mol-ecule of the title compound, C(9)H(9)N(5)O, is essentially planar (r.m.s. deviation of all atoms = 0.02 Å) except for the n class="Disease">NH(2) H atoms. An intra-molecular hydrazinyl-idene-carbonyl N-H⋯O=C hydrogen bond is present. In the crystal, mol-ecules are connected via N-H⋯N/O hydrogen bonds, forming thick layers parallel to (100).

Entities:  

Year:  2013        PMID: 23424472      PMCID: PMC3569249          DOI: 10.1107/S1600536812050854

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis, chemistry and biological/medical activity of related compounds is described in: Elgemeie (2003 ▶); Elgemeie & El-Aziz (2002 ▶); Elgemeie & Sood (2003 ▶, 2006 ▶); Elgemeie et al. (2001 ▶, 2007 ▶, 2008 ▶, 2009 ▶).

Experimental

Crystal data

C9H9N5O M = 203.21 Monoclinic, a = 6.7380 (2) Å b = 13.4310 (4) Å c = 10.4563 (3) Å β = 103.094 (3)° V = 921.67 (5) Å3 Z = 4 Cu Kα radiation μ = 0.86 mm−1 T = 100 K 0.15 × 0.10 × 0.03 mm

Data collection

Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.668, T max = 1.000 26682 measured reflections 1914 independent reflections 1807 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.087 S = 1.05 1914 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812050854/gg2105sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050854/gg2105Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050854/gg2105Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N5OF(000) = 424
Mr = 203.21Dx = 1.464 Mg m3
Monoclinic, P21/cMelting point: 518 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 6.7380 (2) ÅCell parameters from 18413 reflections
b = 13.4310 (4) Åθ = 3.3–75.6°
c = 10.4563 (3) ŵ = 0.86 mm1
β = 103.094 (3)°T = 100 K
V = 921.67 (5) Å3Tablet, orange-brown
Z = 40.15 × 0.10 × 0.03 mm
Oxford Diffraction Xcalibur (Atlas, Nova) diffractometer1914 independent reflections
Radiation source: Nova (Cu) X-ray Source1807 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.3543 pixels mm-1θmax = 75.8°, θmin = 5.5°
ω–scanh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −16→16
Tmin = 0.668, Tmax = 1.000l = −13→13
26682 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0473P)2 + 0.2869P] where P = (Fo2 + 2Fc2)/3
1914 reflections(Δ/σ)max < 0.001
152 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)- 6.7047 (0.0004) x + 0.5009 (0.0024) y + 3.2946 (0.0013) z = 0.2057 (0.0017)* -0.0265 (0.0007) O1 * -0.0015 (0.0008) N1 * 0.0248 (0.0008) N2 * 0.0064 (0.0007) N3 * -0.0035 (0.0008) N4 * 0.0047 (0.0008) N5 * 0.0127 (0.0009) C3 * -0.0173 (0.0009) C4 * -0.0155 (0.0009) C5 * 0.0096 (0.0009) C11 * 0.0334 (0.0009) C12 * 0.0207 (0.0009) C13 * -0.0104 (0.0009) C14 * -0.0239 (0.0009) C15 * -0.0136 (0.0009) C16 0.3618 (0.0145) H03A 0.2676 (0.0152) H03BRms deviation of fitted atoms = 0.0175
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.09284 (11)0.44649 (5)0.17545 (7)0.02234 (19)
N10.06030 (14)0.60858 (6)0.09217 (8)0.0210 (2)
H010.008 (2)0.5972 (11)0.0053 (16)0.036 (4)*
N20.08679 (13)0.70841 (6)0.13887 (8)0.0210 (2)
C30.15061 (15)0.70044 (7)0.26628 (10)0.0188 (2)
C40.16773 (15)0.59729 (7)0.30772 (10)0.0182 (2)
C50.10365 (15)0.53946 (8)0.18664 (9)0.0190 (2)
N30.19896 (14)0.77858 (7)0.35089 (9)0.0230 (2)
H03B0.202 (2)0.7633 (12)0.4385 (16)0.041 (4)*
H03A0.135 (2)0.8364 (12)0.3206 (15)0.036 (4)*
N40.22316 (12)0.56774 (6)0.42917 (8)0.0180 (2)
N50.22648 (13)0.47167 (6)0.45303 (8)0.0193 (2)
H050.189 (2)0.4280 (12)0.3870 (15)0.034 (4)*
C110.28700 (14)0.43692 (8)0.58298 (10)0.0190 (2)
C120.28637 (16)0.33470 (8)0.60446 (11)0.0229 (2)
H120.24420.29010.53290.028*
C130.34813 (16)0.29858 (8)0.73178 (11)0.0268 (3)
H130.34870.22890.74730.032*
C140.40897 (16)0.36360 (9)0.83626 (11)0.0283 (3)
H140.45160.33860.92320.034*
C150.40732 (17)0.46548 (9)0.81331 (10)0.0271 (3)
H150.44840.50990.88510.033*
C160.34645 (16)0.50330 (8)0.68682 (10)0.0223 (2)
H160.34540.57300.67150.027*
U11U22U33U12U13U23
O10.0293 (4)0.0182 (4)0.0181 (4)−0.0032 (3)0.0024 (3)−0.0003 (3)
N10.0273 (5)0.0194 (4)0.0149 (4)−0.0021 (3)0.0018 (3)0.0002 (3)
N20.0249 (4)0.0182 (4)0.0193 (4)−0.0005 (3)0.0038 (3)0.0006 (3)
C30.0188 (5)0.0190 (5)0.0189 (5)0.0015 (4)0.0045 (4)0.0008 (4)
C40.0188 (5)0.0189 (5)0.0166 (5)0.0006 (4)0.0036 (4)−0.0002 (4)
C50.0199 (5)0.0205 (5)0.0164 (5)−0.0012 (4)0.0038 (4)0.0008 (4)
N30.0310 (5)0.0173 (4)0.0199 (4)0.0032 (4)0.0042 (4)−0.0004 (3)
N40.0190 (4)0.0179 (4)0.0172 (4)0.0019 (3)0.0042 (3)0.0012 (3)
N50.0237 (4)0.0178 (4)0.0155 (4)0.0001 (3)0.0028 (3)−0.0002 (3)
C110.0170 (4)0.0228 (5)0.0170 (5)0.0015 (4)0.0039 (4)0.0034 (4)
C120.0216 (5)0.0225 (5)0.0246 (5)0.0002 (4)0.0049 (4)0.0016 (4)
C130.0229 (5)0.0262 (6)0.0316 (6)0.0021 (4)0.0071 (4)0.0107 (4)
C140.0239 (5)0.0384 (7)0.0220 (5)0.0025 (5)0.0040 (4)0.0111 (5)
C150.0272 (5)0.0360 (6)0.0175 (5)−0.0002 (5)0.0034 (4)0.0008 (4)
C160.0238 (5)0.0242 (5)0.0188 (5)0.0006 (4)0.0045 (4)0.0010 (4)
O1—C51.2548 (13)C13—C141.3861 (17)
N1—C51.3387 (13)C14—C151.3890 (17)
N1—N21.4242 (12)C15—C161.3891 (15)
N2—C31.3083 (13)N1—H010.909 (16)
C3—N31.3637 (13)N3—H03B0.934 (17)
C3—C41.4484 (13)N3—H03A0.908 (16)
C4—N41.3019 (13)N5—H050.897 (16)
C4—C51.4645 (13)C12—H120.9500
N4—N51.3134 (12)C13—H130.9500
N5—C111.4069 (13)C14—H140.9500
C11—C121.3914 (15)C15—H150.9500
C11—C161.3918 (15)C16—H160.9500
C12—C131.3892 (15)
C5—N1—N2114.23 (8)C14—C15—C16120.92 (10)
C3—N2—N1105.00 (8)C15—C16—C11118.64 (10)
N2—C3—N3124.94 (9)C5—N1—H01126.2 (10)
N2—C3—C4111.62 (9)N2—N1—H01119.4 (10)
N3—C3—C4123.43 (9)C3—N3—H03B114.5 (10)
N4—C4—C3124.69 (9)C3—N3—H03A114.0 (9)
N4—C4—C5130.16 (9)H03B—N3—H03A115.7 (14)
C3—C4—C5105.11 (8)N4—N5—H05120.4 (10)
O1—C5—N1128.54 (9)C11—N5—H05119.7 (10)
O1—C5—C4127.43 (9)C13—C12—H12120.4
N1—C5—C4104.03 (9)C11—C12—H12120.4
C4—N4—N5118.26 (9)C14—C13—H13119.8
N4—N5—C11119.87 (8)C12—C13—H13119.8
C12—C11—C16121.13 (9)C13—C14—H14120.2
C12—C11—N5118.19 (9)C15—C14—H14120.2
C16—C11—N5120.67 (9)C14—C15—H15119.5
C13—C12—C11119.21 (10)C16—C15—H15119.5
C14—C13—C12120.42 (10)C15—C16—H16120.7
C13—C14—C15119.68 (10)C11—C16—H16120.7
C5—N1—N2—C30.65 (12)C3—C4—N4—N5178.06 (9)
N1—N2—C3—N3178.81 (9)C5—C4—N4—N50.52 (16)
N1—N2—C3—C4−0.17 (11)C4—N4—N5—C11179.53 (9)
N2—C3—C4—N4−178.34 (9)N4—N5—C11—C12179.30 (8)
N3—C3—C4—N42.66 (16)N4—N5—C11—C16−0.93 (14)
N2—C3—C4—C5−0.29 (12)C16—C11—C12—C13−0.62 (15)
N3—C3—C4—C5−179.29 (9)N5—C11—C12—C13179.15 (9)
N2—N1—C5—O1179.27 (9)C11—C12—C13—C140.23 (16)
N2—N1—C5—C4−0.81 (11)C12—C13—C14—C150.24 (16)
N4—C4—C5—O1−1.54 (18)C13—C14—C15—C16−0.33 (17)
C3—C4—C5—O1−179.44 (10)C14—C15—C16—C11−0.05 (16)
N4—C4—C5—N1178.55 (10)C12—C11—C16—C150.53 (15)
C3—C4—C5—N10.65 (10)N5—C11—C16—C15−179.24 (9)
D—H···AD—HH···AD···AD—H···A
N1—H01···O1i0.909 (16)1.949 (16)2.8521 (11)172.0 (14)
N3—H03B···N2ii0.934 (17)2.424 (16)3.2711 (12)150.8 (13)
N3—H03A···O1iii0.908 (16)2.141 (15)2.9635 (11)150.2 (13)
N3—H03B···N1ii0.934 (17)2.674 (16)3.2562 (13)121.1 (12)
N5—H05···O10.897 (16)2.174 (16)2.8575 (11)132.5 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H01⋯O1i 0.909 (16)1.949 (16)2.8521 (11)172.0 (14)
N3—H03B⋯N2ii 0.934 (17)2.424 (16)3.2711 (12)150.8 (13)
N3—H03A⋯O1iii 0.908 (16)2.141 (15)2.9635 (11)150.2 (13)
N5—H05⋯O10.897 (16)2.174 (16)2.8575 (11)132.5 (13)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  A second polymorph of (Z)-3-amino-4-(2-phenyl-hydrazinyl-idene)-1H-pyrazol-5(4H)-one.

Authors:  Abdel-Sattar S Hamad Elgazwy; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-15
  1 in total

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