Literature DB >> 23424456

3-({4-[(2-Methyl-benzyl-idene)amino]-5-sulfanyl-idene-1H-1,2,4-triazol-3-yl}meth-yl)-1,3-benzoxazol-2(3H)-one.

Abdullah Aydın1, Nuray Hekimoğlu, Mehmet Akkurt, Tijen Onkol, Sölen Urlu Ciçekli, Orhan Büyükgüngör.   

Abstract

In the title compound, C(18)H(15)N(5)O(2)S, a weak intra-molecular C-H⋯S hydrogen bond results in a small dihedral angle of 3.71 (9)° between the methyl-phenyl and triazole rings, which, in turn, form dihedral angles of 80.09 (8) and 77.32 (8)°, respectively, with the benzoxazolone mean plane. In the crystal, N-H⋯O hydrogen bonds link mol-ecules into chains along [001], and weak C-H⋯N hydrogen bonds and π-π inter-actions between the five- and six-membered rings [centroid-centroid distances = 3.5074 (11) and 3.616 (1) Å] consolidate the crystal packing.

Entities:  

Year:  2013        PMID: 23424456      PMCID: PMC3569233          DOI: 10.1107/S1600536812051458

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Urlu-Cicekli et al. (2012 ▶). For related structures, see: Aydın et al. (2005 ▶, 2012 ▶). For a MOPAC AM1 theoretical full-geometry optimization, see: Dewar et al. (1985 ▶); Stewart (1993 ▶).

Experimental

Crystal data

C18H15N5O2S M = 365.42 Monoclinic, a = 18.0823 (13) Å b = 6.4623 (4) Å c = 15.1892 (11) Å β = 100.821 (6)° V = 1743.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.62 × 0.48 × 0.22 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.881, T max = 0.955 10084 measured reflections 3958 independent reflections 3034 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.110 S = 1.03 3958 reflections 237 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812051458/cv5375sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051458/cv5375Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051458/cv5375Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15N5O2SF(000) = 760
Mr = 365.42Dx = 1.392 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 14230 reflections
a = 18.0823 (13) Åθ = 1.6–28.1°
b = 6.4623 (4) ŵ = 0.21 mm1
c = 15.1892 (11) ÅT = 296 K
β = 100.821 (6)°Prism, colourless
V = 1743.4 (2) Å30.62 × 0.48 × 0.22 mm
Z = 4
Stoe IPDS 2 diffractometer3958 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3034 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.029
Detector resolution: 6.67 pixels mm-1θmax = 27.6°, θmin = 2.3°
ω scansh = −23→23
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −8→8
Tmin = 0.881, Tmax = 0.955l = −19→11
10084 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0522P)2 + 0.2998P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3958 reflectionsΔρmax = 0.21 e Å3
237 parametersΔρmin = −0.27 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0052 (11)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.82101 (3)0.21261 (9)0.49178 (3)0.0661 (2)
O10.57137 (8)−0.3003 (2)0.04586 (9)0.0678 (5)
O20.69462 (8)−0.2533 (3)0.04013 (11)0.0879 (6)
N10.63001 (7)−0.0347 (2)0.11876 (9)0.0488 (4)
N20.76393 (7)0.19558 (19)0.30855 (8)0.0395 (4)
N30.73011 (8)−0.0492 (2)0.38509 (9)0.0502 (4)
N40.69353 (8)−0.0842 (2)0.29879 (9)0.0506 (4)
N50.78893 (7)0.3744 (2)0.27189 (9)0.0461 (4)
C10.51976 (10)−0.1911 (3)0.08396 (12)0.0528 (5)
C20.44430 (11)−0.2291 (3)0.07683 (16)0.0697 (7)
C30.40518 (11)−0.0913 (4)0.11896 (16)0.0753 (8)
C40.43962 (11)0.0728 (4)0.16624 (15)0.0715 (7)
C50.51655 (10)0.1116 (3)0.17325 (13)0.0599 (6)
C60.55532 (9)−0.0251 (3)0.13032 (10)0.0456 (5)
C70.63901 (11)−0.1995 (3)0.06662 (12)0.0596 (6)
C80.69017 (9)0.1059 (3)0.15606 (11)0.0529 (5)
C90.71518 (8)0.0672 (2)0.25402 (10)0.0420 (4)
C100.77295 (8)0.1213 (2)0.39537 (10)0.0434 (4)
C110.84178 (9)0.4744 (3)0.31801 (11)0.0505 (5)
C120.87066 (8)0.6636 (2)0.28379 (11)0.0449 (5)
C130.85106 (10)0.7124 (3)0.19330 (12)0.0565 (6)
C140.87728 (12)0.8909 (3)0.16082 (15)0.0698 (8)
C150.92305 (12)1.0222 (3)0.21815 (18)0.0753 (9)
C160.94356 (11)0.9736 (3)0.30694 (17)0.0674 (8)
C170.91832 (9)0.7942 (3)0.34227 (13)0.0529 (6)
C180.94257 (14)0.7470 (4)0.44018 (16)0.0802 (8)
H20.42100−0.342000.045200.0840*
H30.35370−0.110100.115300.0900*
H3A0.72590−0.129900.428900.0600*
H40.411100.161600.194600.0860*
H50.540000.223900.205300.0720*
H8A0.672700.247600.146600.0630*
H8B0.732300.087100.125700.0630*
H110.863000.427400.375000.0610*
H130.820000.623800.154600.0680*
H140.864100.922900.100200.0840*
H150.940101.144300.196400.0900*
H160.975201.062800.344700.0810*
H18A0.986100.828200.464300.1200*
H18B0.954700.602700.447700.1200*
H18C0.902400.779800.471100.1200*
U11U22U33U12U13U23
S10.0839 (4)0.0758 (3)0.0346 (2)−0.0221 (3)0.0009 (2)−0.0032 (2)
O10.0728 (8)0.0642 (8)0.0609 (8)0.0012 (7)−0.0013 (6)−0.0295 (7)
O20.0712 (9)0.1311 (14)0.0591 (9)0.0311 (9)0.0062 (7)−0.0369 (9)
N10.0457 (7)0.0603 (8)0.0389 (7)−0.0010 (6)0.0039 (5)−0.0145 (6)
N20.0417 (6)0.0436 (7)0.0328 (6)−0.0067 (5)0.0059 (5)−0.0014 (5)
N30.0569 (8)0.0546 (8)0.0386 (7)−0.0128 (6)0.0074 (6)0.0046 (6)
N40.0523 (7)0.0565 (8)0.0421 (7)−0.0142 (6)0.0068 (6)−0.0025 (6)
N50.0530 (7)0.0443 (7)0.0399 (7)−0.0085 (6)0.0057 (5)0.0031 (6)
C10.0567 (10)0.0530 (9)0.0448 (9)−0.0032 (8)−0.0005 (7)−0.0062 (7)
C20.0622 (11)0.0728 (13)0.0676 (13)−0.0179 (10)−0.0044 (9)0.0032 (10)
C30.0509 (10)0.1009 (17)0.0711 (14)−0.0056 (11)0.0034 (9)0.0198 (12)
C40.0624 (11)0.0892 (15)0.0650 (12)0.0249 (11)0.0177 (9)0.0078 (11)
C50.0604 (10)0.0635 (11)0.0539 (10)0.0106 (9)0.0057 (8)−0.0113 (9)
C60.0461 (8)0.0506 (9)0.0375 (8)0.0030 (7)0.0011 (6)−0.0051 (6)
C70.0599 (10)0.0753 (12)0.0400 (9)0.0120 (9)−0.0002 (7)−0.0175 (8)
C80.0508 (9)0.0694 (11)0.0367 (8)−0.0118 (8)0.0036 (6)−0.0021 (7)
C90.0391 (7)0.0498 (8)0.0368 (7)−0.0060 (6)0.0067 (6)−0.0036 (6)
C100.0455 (8)0.0486 (8)0.0363 (7)−0.0028 (7)0.0081 (6)0.0003 (6)
C110.0533 (9)0.0509 (9)0.0434 (8)−0.0082 (7)−0.0010 (7)0.0060 (7)
C120.0433 (8)0.0419 (8)0.0495 (9)−0.0003 (6)0.0086 (6)0.0042 (6)
C130.0614 (10)0.0560 (10)0.0519 (10)−0.0004 (8)0.0105 (8)0.0082 (8)
C140.0835 (14)0.0639 (12)0.0674 (13)0.0069 (11)0.0281 (10)0.0218 (10)
C150.0765 (13)0.0500 (11)0.1094 (19)−0.0025 (10)0.0431 (13)0.0200 (12)
C160.0590 (11)0.0476 (10)0.0968 (17)−0.0087 (8)0.0175 (10)−0.0044 (10)
C170.0477 (9)0.0457 (9)0.0638 (11)−0.0027 (7)0.0066 (7)−0.0027 (8)
C180.0886 (15)0.0728 (14)0.0678 (14)−0.0154 (12)−0.0146 (11)−0.0060 (11)
S1—C101.6643 (15)C11—C121.463 (2)
O1—C11.381 (2)C12—C171.399 (2)
O1—C71.369 (2)C12—C131.390 (2)
O2—C71.202 (3)C13—C141.374 (3)
N1—C61.396 (2)C14—C151.376 (3)
N1—C71.355 (2)C15—C161.367 (4)
N1—C81.449 (2)C16—C171.390 (3)
N2—N51.3944 (18)C17—C181.501 (3)
N2—C91.3701 (19)C2—H20.9300
N2—C101.3839 (19)C3—H30.9300
N3—N41.3716 (19)C4—H40.9300
N3—C101.3391 (19)C5—H50.9300
N4—C91.2934 (19)C8—H8A0.9700
N5—C111.253 (2)C8—H8B0.9700
N3—H3A0.8600C11—H110.9300
C1—C61.375 (3)C13—H130.9300
C1—C21.371 (3)C14—H140.9300
C2—C31.369 (3)C15—H150.9300
C3—C41.364 (3)C16—H160.9300
C4—C51.398 (3)C18—H18A0.9600
C5—C61.367 (3)C18—H18B0.9600
C8—C91.493 (2)C18—H18C0.9600
C1—O1—C7107.77 (14)C12—C13—C14120.31 (17)
C6—N1—C7109.49 (14)C13—C14—C15119.9 (2)
C6—N1—C8126.61 (14)C14—C15—C16120.17 (19)
C7—N1—C8123.90 (14)C15—C16—C17121.7 (2)
N5—N2—C9118.71 (12)C16—C17—C18119.74 (19)
N5—N2—C10132.76 (12)C12—C17—C16117.77 (18)
C9—N2—C10108.26 (12)C12—C17—C18122.50 (18)
N4—N3—C10114.32 (13)C1—C2—H2122.00
N3—N4—C9103.80 (13)C3—C2—H2122.00
N2—N5—C11118.33 (14)C2—C3—H3119.00
N4—N3—H3A123.00C4—C3—H3119.00
C10—N3—H3A123.00C3—C4—H4119.00
C2—C1—C6122.91 (18)C5—C4—H4119.00
O1—C1—C6109.00 (15)C4—C5—H5122.00
O1—C1—C2128.06 (18)C6—C5—H5122.00
C1—C2—C3116.16 (19)N1—C8—H8A110.00
C2—C3—C4121.81 (19)N1—C8—H8B110.00
C3—C4—C5121.9 (2)C9—C8—H8A110.00
C4—C5—C6116.10 (18)C9—C8—H8B110.00
N1—C6—C5133.14 (17)H8A—C8—H8B108.00
N1—C6—C1105.75 (15)N5—C11—H11119.00
C1—C6—C5121.07 (16)C12—C11—H11119.00
O1—C7—N1107.96 (16)C12—C13—H13120.00
O2—C7—N1128.50 (19)C14—C13—H13120.00
O1—C7—O2123.53 (18)C13—C14—H14120.00
N1—C8—C9110.46 (14)C15—C14—H14120.00
N2—C9—C8122.77 (13)C14—C15—H15120.00
N2—C9—N4111.35 (13)C16—C15—H15120.00
N4—C9—C8125.86 (14)C15—C16—H16119.00
N2—C10—N3102.25 (12)C17—C16—H16119.00
S1—C10—N3126.12 (12)C17—C18—H18A109.00
S1—C10—N2131.61 (11)C17—C18—H18B109.00
N5—C11—C12121.20 (15)C17—C18—H18C109.00
C13—C12—C17120.23 (15)H18A—C18—H18B109.00
C11—C12—C13119.96 (14)H18A—C18—H18C110.00
C11—C12—C17119.81 (15)H18B—C18—H18C109.00
C7—O1—C1—C2176.4 (2)N3—N4—C9—N20.12 (17)
C7—O1—C1—C6−1.5 (2)N2—N5—C11—C12−179.86 (14)
C1—O1—C7—O2−177.25 (19)C2—C1—C6—C50.7 (3)
C1—O1—C7—N11.76 (19)C2—C1—C6—N1−177.42 (18)
C7—N1—C6—C10.53 (19)O1—C1—C2—C3−177.6 (2)
C8—N1—C6—C1−179.11 (15)C6—C1—C2—C3−0.1 (3)
C6—N1—C7—O1−1.43 (19)O1—C1—C6—N10.57 (19)
C8—N1—C7—O2−2.8 (3)O1—C1—C6—C5178.73 (16)
C8—N1—C7—O1178.22 (14)C1—C2—C3—C4−0.8 (3)
C6—N1—C7—O2177.5 (2)C2—C3—C4—C51.0 (4)
C8—N1—C6—C53.1 (3)C3—C4—C5—C6−0.3 (3)
C6—N1—C8—C974.0 (2)C4—C5—C6—C1−0.5 (3)
C7—N1—C8—C9−105.58 (18)C4—C5—C6—N1177.04 (19)
C7—N1—C6—C5−177.31 (19)N1—C8—C9—N47.5 (2)
C9—N2—N5—C11−169.40 (15)N1—C8—C9—N2−170.82 (13)
C9—N2—C10—S1−176.79 (12)N5—C11—C12—C13−13.5 (2)
N5—N2—C10—S1−3.0 (3)N5—C11—C12—C17166.92 (16)
C10—N2—C9—C8177.50 (14)C11—C12—C13—C14179.29 (17)
N5—N2—C9—N4−175.91 (13)C17—C12—C13—C14−1.1 (3)
C10—N2—N5—C1117.3 (2)C11—C12—C17—C16−179.17 (16)
C9—N2—C10—N31.52 (15)C11—C12—C17—C180.9 (3)
C10—N2—C9—N4−1.08 (17)C13—C12—C17—C161.2 (2)
N5—N2—C10—N3175.34 (15)C13—C12—C17—C18−178.74 (18)
N5—N2—C9—C82.7 (2)C12—C13—C14—C15−0.1 (3)
C10—N3—N4—C90.95 (18)C13—C14—C15—C161.2 (3)
N4—N3—C10—N2−1.55 (17)C14—C15—C16—C17−1.1 (3)
N4—N3—C10—S1176.89 (11)C15—C16—C17—C12−0.2 (3)
N3—N4—C9—C8−178.40 (15)C15—C16—C17—C18179.8 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O2i0.862.032.856 (2)162
C4—H4···N4ii0.932.523.387 (3)155
C8—H8B···O20.972.582.924 (3)101
C11—H11···S10.932.483.2159 (18)136
C3—H3···Cg2iii0.932.943.635 (2)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O2i 0.862.032.856 (2)162
C4—H4⋯N4ii 0.932.523.387 (3)155
C11—H11⋯S10.932.483.2159 (18)136

Symmetry codes: (i) ; (ii) .

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Authors:  Abdullah Aydın; Zeynep Soyer; Mehmet Akkurt; Orhan Büyükgüngör
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