Literature DB >> 23422340

IRootLab: a free and open-source MATLAB toolbox for vibrational biospectroscopy data analysis.

Júlio Trevisan1, Plamen P Angelov, Andrew D Scott, Paul L Carmichael, Francis L Martin.   

Abstract

SUMMARY: IRootLab is a free and open-source MATLAB toolbox for vibrational biospectroscopy (VBS) data analysis. It offers an object-oriented programming class library, graphical user interfaces (GUIs) and automatic MATLAB code generation. The class library contains a large number of methods, concepts and visualizations for VBS data analysis, some of which are introduced in the toolbox. The GUIs provide an interface to the class library, including a module to merge several spectral files into a dataset. Automatic code allows developers to quickly write VBS data analysis scripts and is a unique resource among tools for VBS. Documentation includes a manual, tutorials, Doxygen-generated reference and a demonstration showcase. IRootLab can handle some of the most popular file formats used in VBS. License: GNU-LGPL. AVAILABILITY: Official website: http://irootlab.googlecode.com/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Mesh：

Year:  2013        PMID： 23422340     DOI： 10.1093/bioinformatics/btt084

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  26 in total

1.  Micro Imaging Displays the Sucrose Landscape within and along Its Allocation Pathways.

Authors:  André Guendel; Hardy Rolletschek; Steffen Wagner; Aleksandra Muszynska; Ljudmilla Borisjuk
Journal:  Plant Physiol       Date:  2018-10-01       Impact factor: 8.340

2.  Infrared microspectroscopy identifies biomolecular changes associated with chronic oxidative stress in mammary epithelium and stroma of breast tissues from healthy young women: implications for latent stages of breast carcinogenesis.

Authors:  Imran I Patel; Debra A Shearer; Simon W Fogarty; Nigel J Fullwood; Luca Quaroni; Francis L Martin; Judith Weisz
Journal:  Cancer Biol Ther       Date:  2013-11-01       Impact factor: 4.742

3.  A biospectroscopic analysis of human prostate tissue obtained from different time periods points to a trans-generational alteration in spectral phenotype.

Authors:  Georgios Theophilou; Kássio M G Lima; Matthew Briggs; Pierre L Martin-Hirsch; Helen F Stringfellow; Francis L Martin
Journal:  Sci Rep       Date:  2015-08-27       Impact factor: 4.379

4.  Gold nanoparticles as a substrate in bio-analytical near-infrared surface-enhanced Raman spectroscopy.

Authors:  Holly J Butler; Simon W Fogarty; Jemma G Kerns; Pierre L Martin-Hirsch; Nigel J Fullwood; Francis L Martin
Journal:  Analyst       Date:  2015-03-24       Impact factor: 4.616

5.  Histology verification demonstrates that biospectroscopy analysis of cervical cytology identifies underlying disease more accurately than conventional screening: removing the confounder of discordance.

Authors:  Ketan Gajjar; Abdullah A Ahmadzai; George Valasoulis; Júlio Trevisan; Christina Founta; Maria Nasioutziki; Aristotelis Loufopoulos; Maria Kyrgiou; Sofia Melina Stasinou; Petros Karakitsos; Evangelos Paraskevaidis; Bianca Da Gama-Rose; Pierre L Martin-Hirsch; Francis L Martin
Journal:  PLoS One       Date:  2014-01-03       Impact factor: 3.240

6.  Surface-enhanced Raman spectroscopy of the endothelial cell membrane.

Authors:  Simon W Fogarty; Imran I Patel; Francis L Martin; Nigel J Fullwood
Journal:  PLoS One       Date:  2014-09-04       Impact factor: 3.240

7.  ATR-FTIR spectroscopy non-destructively detects damage-induced sour rot infection in whole tomato fruit.

Authors:  Paul Skolik; Martin R McAinsh; Francis L Martin
Journal:  Planta       Date:  2018-11-28       Impact factor: 4.116

8.  Perfluoroalkylated Substance Effects in Xenopus laevis A6 Kidney Epithelial Cells Determined by ATR-FTIR Spectroscopy and Chemometric Analysis.

Authors:  Eva Gorrochategui; Sílvia Lacorte; Romà Tauler; Francis L Martin
Journal:  Chem Res Toxicol       Date:  2016-04-25       Impact factor: 3.739

9.  Low-dose carbon-based nanoparticle-induced effects in A549 lung cells determined by biospectroscopy are associated with increases in genomic methylation.

Authors:  Junyi Li; Meiping Tian; Li Cui; John Dwyer; Nigel J Fullwood; Heqing Shen; Francis L Martin
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

10.  FTIR Spectroscopic and Molecular Analysis during Differentiation of Pluripotent Stem Cells to Pancreatic Cells.

Authors:  Gustavo Jesus Vazquez-Zapien; Monica Maribel Mata-Miranda; Virginia Sanchez-Monroy; Raul Jacobo Delgado-Macuil; David Guillermo Perez-Ishiwara; Marlon Rojas-Lopez
Journal:  Stem Cells Int       Date:  2016-08-29       Impact factor: 5.443
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