Literature DB >> 23417794

¹H, ¹³C, ¹⁵N backbone and side chain NMR resonance assignments for the N-terminal RNA recognition motif of the HvGR-RBP1 protein involved in the regulation of barley (Hordeum vulgare L.) senescence.

Katelyn E Mason1, Brian P Tripet, David Parrott, Andreas M Fischer, Valérie Copié.   

Abstract

Leaf senescence is an important process in the developmental life of all plant species. Senescence efficiency influences important agricultural traits such as grain protein content and plant growth, which are often limited by nitrogen use. Little is known about the molecular mechanisms regulating this highly orchestrated process. To enhance our understanding of leaf senescence and its regulation, we have undertaken the structural and functional characterization of previously unknown proteins that are involved in the control of senescence in barley (Hordeum vulgare L.). Previous microarray analysis highlighted several barley genes whose transcripts are differentially expressed during senescence, including a specific gene which is greater than 40-fold up-regulated in the flag leaves of early- as compared to late-senescing near-isogenic barley lines at 14 and 21 days past flowering (anthesis). From inspection of its amino acid sequence, this gene is predicted to encode a glycine-rich RNA-binding protein herein referred to as HvGR-RBP1. HvGR-RBP1 has been expressed as a recombinant protein in Escherichia coli, and preliminary NMR data analysis has revealed that its glycine-rich C-terminal region [residues: 93-162] is structurally disordered whereas its N-terminal region [residues: 1-92] forms a well-folded domain. Herein, we report the complete (1)H, (13)C, and (15)N resonance assignments of backbone and sidechain atoms, and the secondary structural topology of the N-terminal RNA recognition motif (RRM) domain of HvGR-RBP1, as a first step to unraveling its structural and functional role in the regulation of barley leaf senescence.

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Year:  2013        PMID: 23417794      PMCID: PMC3672310          DOI: 10.1007/s12104-013-9472-8

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  10 in total

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Review 2.  The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression.

Authors:  Christophe Maris; Cyril Dominguez; Frédéric H-T Allain
Journal:  FEBS J       Date:  2005-05       Impact factor: 5.542

Review 3.  Leaf senescence and nutrient remobilisation in barley and wheat.

Authors:  P L Gregersen; P B Holm; K Krupinska
Journal:  Plant Biol (Stuttg)       Date:  2008-09       Impact factor: 3.081

Review 4.  RNA recognition motifs: boring? Not quite.

Authors:  Antoine Cléry; Markus Blatter; Frédéric H-T Allain
Journal:  Curr Opin Struct Biol       Date:  2008-06       Impact factor: 6.809

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Internal dynamics of the tryptophan repressor (TrpR) and two functionally distinct TrpR variants, L75F-TrpR and A77V-TrpR, in their l-Trp-bound forms.

Authors:  Brian P Tripet; Anupam Goel; Valerie Copie
Journal:  Biochemistry       Date:  2011-05-20       Impact factor: 3.162

7.  Three arginine residues within the RGG box are crucial for ICP27 binding to herpes simplex virus 1 GC-rich sequences and for efficient viral RNA export.

Authors:  Kara A Corbin-Lickfett; Stuart K Souki; Melanie J Cocco; Rozanne M Sandri-Goldin
Journal:  J Virol       Date:  2010-04-21       Impact factor: 5.103

8.  Comparative transcriptome profiling of near-isogenic barley (Hordeum vulgare) lines differing in the allelic state of a major grain protein content locus identifies genes with possible roles in leaf senescence and nitrogen reallocation.

Authors:  Aravind K Jukanti; Nancy M Heidlebaugh; David L Parrott; Isabelle A Fischer; Kate McInnerney; Andreas M Fischer
Journal:  New Phytol       Date:  2007-11-19       Impact factor: 10.151

9.  Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.

Authors:  Kanako Kuwasako; Mari Takahashi; Naoya Tochio; Chikage Abe; Kengo Tsuda; Makoto Inoue; Takaho Terada; Mikako Shirouzu; Naohiro Kobayashi; Takanori Kigawa; Seiichi Taguchi; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Yutaka Muto; Shigeyuki Yokoyama
Journal:  Biochemistry       Date:  2008-05-24       Impact factor: 3.162

Review 10.  Protein chemical shift analysis: a practical guide.

Authors:  D S Wishart; A M Nip
Journal:  Biochem Cell Biol       Date:  1998       Impact factor: 3.626

  10 in total
  3 in total

1.  Structural basis of nucleic acid binding by Nicotiana tabacum glycine-rich RNA-binding protein: implications for its RNA chaperone function.

Authors:  Fariha Khan; Mark A Daniëls; Gert E Folkers; Rolf Boelens; S M Saqlan Naqvi; Hugo van Ingen
Journal:  Nucleic Acids Res       Date:  2014-06-23       Impact factor: 16.971

2.  Structural and biochemical analysis of the Hordeum vulgare L. HvGR-RBP1 protein, a glycine-rich RNA-binding protein involved in the regulation of barley plant development and stress response.

Authors:  Brian P Tripet; Katelyn E Mason; Brian J Eilers; Jennifer Burns; Paul Powell; Andreas M Fischer; Valérie Copié
Journal:  Biochemistry       Date:  2014-12-12       Impact factor: 3.162

3.  Genomic dissection of plant development and its impact on thousand grain weight in barley through nested association mapping.

Authors:  Andreas Maurer; Vera Draba; Klaus Pillen
Journal:  J Exp Bot       Date:  2016-03-01       Impact factor: 6.992

  3 in total

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