Literature DB >> 23417260

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study.

Rudy G E van Eijsden1, Catherine Stassen, Luk Daenen, Sebastiaan E Van Mulders, Prashant M Bapat, Verena Siewers, Katty V Y Goossens, Jens Nielsen, Freddy R Delvaux, Paul Van Hummelen, Bart Devreese, Ronnie G Willaert.   

Abstract

Genomics, transcriptomics, proteomics and fluxomics are powerful omics-technologies that play a major role in today's research. For each of these techniques good sample quality is crucial. Major factors contributing to the quality of a sample is the actual sampling procedure itself and the way the sample is stored directly after sampling. It has already been described that RNAlater can be used to store tissues and cells in a way that the RNA quality and quantity are preserved. In this paper, we demonstrate that quaternary ammonium salts (RNAlater) are also suitable to preserve and store samples from Saccharomyces cerevisiae for later use with the four major omics-technologies. Moreover, it is shown that RNAlater also preserves the cell morphology and the potential to recover growth, permitting microscopic analysis and yeast cell culturing at a later stage.

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Year:  2013        PMID: 23417260     DOI: 10.1007/s10529-013-1163-0

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  9 in total

1.  Suitability of RNALater solution as a tissue-preserving reagent for immunohistochemical analysis.

Authors:  Anastasia V Suhovskih; Galina M Kazanskaya; Alexander M Volkov; Alexandra Y Tsidulko; Svetlana V Aidagulova; Elvira V Grigorieva
Journal:  Histochem Cell Biol       Date:  2019-06-14       Impact factor: 4.304

2.  Spaceflight induces specific alterations in the proteomes of Arabidopsis.

Authors:  Robert J Ferl; Jin Koh; Fiona Denison; Anna-Lisa Paul
Journal:  Astrobiology       Date:  2014-12-17       Impact factor: 4.335

3.  Temporal and technical variability of human gut metagenomes.

Authors:  Anita Y Voigt; Paul I Costea; Jens Roat Kultima; Simone S Li; Georg Zeller; Shinichi Sunagawa; Peer Bork
Journal:  Genome Biol       Date:  2015-04-08       Impact factor: 13.583

Review 4.  World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonisation Project: IV. Tissue collection, processing, and storage in endometriosis research.

Authors:  Amelie Fassbender; Nilufer Rahmioglu; Allison F Vitonis; Paola Viganò; Linda C Giudice; Thomas M D'Hooghe; Lone Hummelshoj; G David Adamson; Christian M Becker; Stacey A Missmer; Krina T Zondervan
Journal:  Fertil Steril       Date:  2014-09-22       Impact factor: 7.329

5.  DNA and RNA Extraction and Quantitative Real-Time PCR-Based Assays for Biogas Biocenoses in an Interlaboratory Comparison.

Authors:  Michael Lebuhn; Jaqueline Derenkó; Antje Rademacher; Susanne Helbig; Bernhard Munk; Alexander Pechtl; Yvonne Stolze; Steffen Prowe; Wolfgang H Schwarz; Andreas Schlüter; Wolfgang Liebl; Michael Klocke
Journal:  Bioengineering (Basel)       Date:  2016-01-13

6.  Rapid Adjustments in Thermal Tolerance and the Metabolome to Daily Environmental Changes - A Field Study on the Arctic Seed Bug Nysius groenlandicus.

Authors:  Natasja Krog Noer; Mathias Hamann Sørensen; Hervé Colinet; David Renault; Simon Bahrndorff; Torsten Nygaard Kristensen
Journal:  Front Physiol       Date:  2022-02-16       Impact factor: 4.566

Review 7.  Space omics research in Europe: Contributions, geographical distribution and ESA member state funding schemes.

Authors:  Colleen S Deane; Willian A da Silveira; Raúl Herranz
Journal:  iScience       Date:  2022-02-15

8.  ⿿Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples.

Authors:  Tue Bjerg Bennike; Kenneth Kastaniegaard; Simona Padurariu; Michael Gaihede; Svend Birkelund; Vibeke Andersen; Allan Stensballe
Journal:  EuPA Open Proteom       Date:  2015-11-02

9.  Expression of HTRA Genes and Its Association with Microsatellite Instability and Survival of Patients with Colorectal Cancer.

Authors:  Dorota Zurawa-Janicka; Jarek Kobiela; Tomasz Slebioda; Rafal Peksa; Marcin Stanislawowski; Piotr Mieczyslaw Wierzbicki; Tomasz Wenta; Barbara Lipinska; Zbigniew Kmiec; Wojciech Biernat; Andrzej Jacek Lachinski; Zbigniew Sledzinski
Journal:  Int J Mol Sci       Date:  2020-05-31       Impact factor: 5.923

  9 in total

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