Literature DB >> 23414324

The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts.

Jennifer F Kugel1, James A Goodrich.   

Abstract

Transcription by RNA Pol II is a tightly controlled process that is critical to normal cellular metabolism. Understanding how transcriptional regulation is orchestrated has mainly involved identifying and characterizing proteins that function as transcription factors. During the past decade, however, an increasing number of lncRNAs have been identified as transcriptional regulators. This revelation has spurred new discoveries, novel techniques and paradigm shifts, which together are redefining our understanding of transcriptional control and broadening our view of RNA function. Here, we summarize recent discoveries concerning the role of lncRNAs as regulators of mammalian mRNA transcription, with a focus on key concepts that are guiding current research in the field.

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Year:  2013        PMID: 23414324      PMCID: PMC3702037          DOI: 10.2217/epi.12.69

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  61 in total

Review 1.  Epigenetics of imprinted long noncoding RNAs.

Authors:  Faizaan Mohammad; Tanmoy Mondal; Chandrasekhar Kanduri
Journal:  Epigenetics       Date:  2009-07-10       Impact factor: 4.528

Review 2.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 3.  New and Xisting regulatory mechanisms of X chromosome inactivation.

Authors:  Yesu Jeon; Kavitha Sarma; Jeannie T Lee
Journal:  Curr Opin Genet Dev       Date:  2012-03-16       Impact factor: 5.578

4.  Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1.

Authors:  Faizaan Mohammad; Tanmoy Mondal; Natalia Guseva; Gaurav Kumar Pandey; Chandrasekhar Kanduri
Journal:  Development       Date:  2010-06-23       Impact factor: 6.868

5.  Long-range chromatin regulatory interactions in vivo.

Authors:  David Carter; Lyubomira Chakalova; Cameron S Osborne; Yan-feng Dai; Peter Fraser
Journal:  Nat Genet       Date:  2002-11-11       Impact factor: 38.330

6.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

7.  MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles.

Authors:  Yasnory T F Sasaki; Takashi Ideue; Miho Sano; Toutai Mituyama; Tetsuro Hirose
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-02       Impact factor: 11.205

8.  Yeast telomerase RNA: a flexible scaffold for protein subunits.

Authors:  David C Zappulla; Thomas R Cech
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-28       Impact factor: 11.205

9.  B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes.

Authors:  Petro Yakovchuk; James A Goodrich; Jennifer F Kugel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

10.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

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  9 in total

Review 1.  LncRNAs in vascular biology and disease.

Authors:  Viorel Simion; Stefan Haemmig; Mark W Feinberg
Journal:  Vascul Pharmacol       Date:  2018-02-06       Impact factor: 5.773

2.  Comprehensive analysis of long non-coding RNA PVT1 gene interaction regulatory network in hepatocellular carcinoma using gene microarray and bioinformatics.

Authors:  Yu Zhang; Yi-Wu Dang; Xiao Wang; Xia Yang; Rui Zhang; Zi-Li Lv; Gang Chen
Journal:  Am J Transl Res       Date:  2017-09-15       Impact factor: 4.060

Review 3.  Long noncoding RNAs and tumorigenesis: genetic associations, molecular mechanisms, and therapeutic strategies.

Authors:  Fan Zhang; Liang Zhang; Caiguo Zhang
Journal:  Tumour Biol       Date:  2015-11-19

4.  LncRNA-SVUGP2 suppresses progression of hepatocellular carcinoma.

Authors:  Jiangfeng Hu; Chenlin Song; Bensong Duan; Xiaoyan Zhang; Dongliang Li; Liang Zhu; Hengjun Gao
Journal:  Oncotarget       Date:  2017-05-29

5.  Long non-coding RNA Gas5 regulates proliferation and apoptosis in HCS-2/8 cells and growth plate chondrocytes by controlling FGF1 expression via miR-21 regulation.

Authors:  Xiong Liu; Yuqi She; Hongrong Wu; Da Zhong; Jian Zhang
Journal:  J Biomed Sci       Date:  2018-02-28       Impact factor: 8.410

6.  Long non-coding RNA zinc finger antisense 1 expression associates with increased disease risk, elevated disease severity and higher inflammatory cytokines levels in patients with lumbar disc degeneration.

Authors:  Ruo-Yu Deng; Tian Hong; Chun-Ying Li; Chun-Li Shi; Cheng Liu; Fang-Yu Jiang; Jun Li; Xiao-Man Fan; Shuang-Bing Feng; Yi-Fan Wang
Journal:  Medicine (Baltimore)       Date:  2019-12       Impact factor: 1.817

7.  PABPC1-induced stabilization of BDNF-AS inhibits malignant progression of glioblastoma cells through STAU1-mediated decay.

Authors:  Rui Su; Jun Ma; Jian Zheng; Xiaobai Liu; Yunhui Liu; Xuelei Ruan; Shuyuan Shen; Chunqing Yang; Di Wang; Heng Cai; Zhen Li; Yixue Xue
Journal:  Cell Death Dis       Date:  2020-02-03       Impact factor: 8.469

8.  Repression of RNA Polymerase II Transcription by B2 RNA Depends on a Specific Pattern of Structural Regions in the RNA.

Authors:  Steven L Ponicsan; Jennifer F Kugel; James A Goodrich
Journal:  Noncoding RNA       Date:  2015-06

9.  Landscape of RNAs in human lumbar disc degeneration.

Authors:  Ping-Heng Lan; Zhi-Heng Liu; Yan-Jun Pei; Zhi-Gang Wu; Yang Yu; Yong-Feng Yang; Xu Liu; Lu Che; Chi-Jiao Ma; Yan-Ke Xie; Qing-Jie Hu; Zhong-Yuan Wan; Hai-Qiang Wang
Journal:  Oncotarget       Date:  2016-09-27
  9 in total

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