Literature DB >> 23412570

Application of microarrays for deciphering the structure and function of the human glycome.

David F Smith1, Richard D Cummings.   

Abstract

Glycan structures were defined historically using multiple methods to determine composition, sequence, linkage, and anomericity of component monosaccharides. Such approaches have been replaced by more sensitive MS methods to profile or predict glycan structures, but these methods are limited in their ability to completely define glycan structures. Glycan-binding proteins, including lectins and antibodies, have been found to have exquisite binding specificities that can provide information about glycan structures. Here, we show glycan-binding proteins can be used along with MS to help define glycan linkages and other determinants in unknown glycans printed as shotgun glycan microarrays.

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Year:  2013        PMID: 23412570      PMCID: PMC3617337          DOI: 10.1074/mcp.R112.027110

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  95 in total

Review 1.  Glycosylation of mouse and human immune cells: insights emerging from N-glycomics analyses.

Authors:  Aristotelis Antonopoulos; Simon J North; Stuart M Haslam; Anne Dell
Journal:  Biochem Soc Trans       Date:  2011-10       Impact factor: 5.407

Review 2.  Oligosaccharide structures: theory versus experiment.

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Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

3.  High-throughput quantitative N-glycan analysis of glycoproteins.

Authors:  Margaret Doherty; Ciara A McManus; Rebecca Duke; Pauline M Rudd
Journal:  Methods Mol Biol       Date:  2012

Review 4.  Tumor-associated carbohydrate antigens.

Authors:  S Hakomori
Journal:  Annu Rev Immunol       Date:  1984       Impact factor: 28.527

5.  Versatile fluorescent derivatization of glycans for glycomic analysis.

Authors:  Baoyun Xia; Ziad S Kawar; Tongzhong Ju; Richard A Alvarez; Goverdhan P Sachdev; Richard D Cummings
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

Review 6.  Use of glycan microarrays to explore specificity of glycan-binding proteins.

Authors:  David F Smith; Xuezheng Song; Richard D Cummings
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

7.  Detailed structural analysis of N-glycans released from glycoproteins in SDS-PAGE gel bands using HPLC combined with exoglycosidase array digestions.

Authors:  Louise Royle; Catherine M Radcliffe; Raymond A Dwek; Pauline M Rudd
Journal:  Methods Mol Biol       Date:  2006

8.  Analysis of tissue glycoprotein sugar chains by two-dimensional high-performance liquid chromatographic mapping.

Authors:  S Hase; K Ikenaka; K Mikoshiba; T Ikenaka
Journal:  J Chromatogr       Date:  1988-12-29

9.  Separation of partially desialylated branched oligosaccharide isomers containing alpha (2-->3)- and alpha (2-->6)-linked Neu5Ac.

Authors:  J S Rohrer; R R Townsend
Journal:  Glycobiology       Date:  1995-06       Impact factor: 4.313

10.  Regulation of glycan structures in murine embryonic stem cells: combined transcript profiling of glycan-related genes and glycan structural analysis.

Authors:  Alison V Nairn; Kazuhiro Aoki; Mitche dela Rosa; Mindy Porterfield; Jae-Min Lim; Michael Kulik; J Michael Pierce; Lance Wells; Stephen Dalton; Michael Tiemeyer; Kelley W Moremen
Journal:  J Biol Chem       Date:  2012-09-17       Impact factor: 5.157

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  33 in total

Review 1.  The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities.

Authors:  Huiyuan Tang; Peter Hsueh; Doron Kletter; Marshall Bern; Brian Haab
Journal:  Adv Cancer Res       Date:  2015-02-07       Impact factor: 6.242

Review 2.  Glycan microarrays of fluorescently-tagged natural glycans.

Authors:  Xuezheng Song; Jamie Heimburg-Molinaro; David F Smith; Richard D Cummings
Journal:  Glycoconj J       Date:  2015-04-16       Impact factor: 2.916

Review 3.  ABO Blood Group as a Model for Platelet Glycan Modification in Arterial Thrombosis.

Authors:  Ming Zhong; Hanrui Zhang; John P Reilly; Jason D Chrisitie; Mayumi Ishihara; Tadahiro Kumagai; Parastoo Azadi; Muredach P Reilly
Journal:  Arterioscler Thromb Vasc Biol       Date:  2015-06-04       Impact factor: 8.311

4.  Functional reprogramming of Candida glabrata epithelial adhesins: the role of conserved and variable structural motifs in ligand binding.

Authors:  Daniel Hoffmann; Rike Diderrich; Viktoria Reithofer; Sabrina Friederichs; Michael Kock; Lars-Oliver Essen; Hans-Ulrich Mösch
Journal:  J Biol Chem       Date:  2020-07-15       Impact factor: 5.157

5.  Microbe-focused glycan array screening platform.

Authors:  Andreas Geissner; Anika Reinhardt; Christoph Rademacher; Timo Johannssen; João Monteiro; Bernd Lepenies; Michel Thépaut; Franck Fieschi; Jana Mrázková; Michaela Wimmerova; Frank Schuhmacher; Sebastian Götze; Dan Grünstein; Xiaoqiang Guo; Heung Sik Hahm; Jeyakumar Kandasamy; Daniele Leonori; Christopher E Martin; Sharavathi G Parameswarappa; Sandip Pasari; Mark K Schlegel; Hidenori Tanaka; Guozhi Xiao; You Yang; Claney L Pereira; Chakkumkal Anish; Peter H Seeberger
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-22       Impact factor: 11.205

Review 6.  Synthetic glycoscapes: addressing the structural and functional complexity of the glycocalyx.

Authors:  Sean C Purcell; Kamil Godula
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

Review 7.  Mass Spectrometry Approaches to Glycomic and Glycoproteomic Analyses.

Authors:  L Renee Ruhaak; Gege Xu; Qiongyu Li; Elisha Goonatilleke; Carlito B Lebrilla
Journal:  Chem Rev       Date:  2018-03-19       Impact factor: 60.622

Review 8.  The challenge and promise of glycomics.

Authors:  Richard D Cummings; J Michael Pierce
Journal:  Chem Biol       Date:  2014-01-16

9.  Human DC-SIGN binds specific human milk glycans.

Authors:  Alexander J Noll; Ying Yu; Yi Lasanajak; Geralyn Duska-McEwen; Rachael H Buck; David F Smith; Richard D Cummings
Journal:  Biochem J       Date:  2016-03-14       Impact factor: 3.857

10.  Adaptive immune activation: glycosylation does matter.

Authors:  Margreet A Wolfert; Geert-Jan Boons
Journal:  Nat Chem Biol       Date:  2013-12       Impact factor: 15.040

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