Literature DB >> 23396093

Exact enumeration of cherries and pitchforks in ranked trees under the coalescent model.

Filippo Disanto1, Thomas Wiehe.   

Abstract

We consider exact enumerations and probabilistic properties of ranked trees when generated under the random coalescent process. Using a new approach, based on generating functions, we derive several statistics such as the exact probability of finding k cherries in a ranked tree of fixed size n. We then extend our method to consider also the number of pitchforks. We find a recursive formula to calculate the joint and conditional probabilities of cherries and pitchforks when the size of the tree is fixed. These results provide insights into structural properties of coalescent trees under the model of neutral evolution.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23396093     DOI: 10.1016/j.mbs.2013.01.010

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  9 in total

1.  Enumeration of Ancestral Configurations for Matching Gene Trees and Species Trees.

Authors:  Filippo Disanto; Noah A Rosenberg
Journal:  J Comput Biol       Date:  2017-04-24       Impact factor: 1.479

2.  On the joint distribution of tree height and tree length under the coalescent.

Authors:  Ilana M Arbisser; Ethan M Jewett; Noah A Rosenberg
Journal:  Theor Popul Biol       Date:  2017-11-10       Impact factor: 1.570

3.  SEQUENTIAL IMPORTANCE SAMPLING FOR MULTIRESOLUTION KINGMAN-TAJIMA COALESCENT COUNTING.

Authors:  Lorenzo Cappello; Julia A Palacios
Journal:  Ann Appl Stat       Date:  2020-06       Impact factor: 2.083

4.  On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees.

Authors:  Kwok Pui Choi; Gursharn Kaur; Taoyang Wu
Journal:  J Math Biol       Date:  2021-09-23       Impact factor: 2.259

5.  Random Forest Segregation of Drug Responses May Define Regions of Biological Significance.

Authors:  Qasim Bukhari; David Borsook; Markus Rudin; Lino Becerra
Journal:  Front Comput Neurosci       Date:  2016-03-09       Impact factor: 2.380

6.  Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees.

Authors:  Julia A Palacios; Amandine Véber; Lorenzo Cappello; Zhangyuan Wang; John Wakeley; Sohini Ramachandran
Journal:  Genetics       Date:  2019-09-11       Impact factor: 4.562

7.  Combinatorial and Computational Investigations of Neighbor-Joining Bias.

Authors:  Ruth Davidson; Abraham Martín Del Campo
Journal:  Front Genet       Date:  2020-10-27       Impact factor: 4.599

8.  The effect of single recombination events on coalescent tree height and shape.

Authors:  Luca Ferretti; Filippo Disanto; Thomas Wiehe
Journal:  PLoS One       Date:  2013-04-08       Impact factor: 3.240

9.  Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies.

Authors:  Julia A Palacios; John Wakeley; Sohini Ramachandran
Journal:  Genetics       Date:  2015-07-28       Impact factor: 4.562

  9 in total

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