Literature DB >> 23395271

The ribosome as a hub for protein quality control.

Sebastian Pechmann1, Felix Willmund, Judith Frydman.   

Abstract

Cells face a constant challenge as they produce new proteins. The newly synthesized polypeptides must be folded properly to avoid aggregation. If proteins do misfold, they must be cleared to maintain a functional and healthy proteome. Recent work is revealing the complex mechanisms that work cotranslationally to ensure protein quality control during biogenesis at the ribosome. Indeed, the ribosome is emerging as a central hub in coordinating these processes, particularly in sensing the nature of the nascent protein chain, recruiting protein folding and translocation components, and integrating mRNA and nascent chain quality control. The tiered and complementary nature of these decision-making processes confers robustness and fidelity to protein homeostasis during protein synthesis.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23395271      PMCID: PMC3593112          DOI: 10.1016/j.molcel.2013.01.020

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  135 in total

1.  Polypeptide flux through bacterial Hsp70: DnaK cooperates with trigger factor in chaperoning nascent chains.

Authors:  S A Teter; W A Houry; D Ang; T Tradler; D Rockabrand; G Fischer; P Blum; C Georgopoulos; F U Hartl
Journal:  Cell       Date:  1999-06-11       Impact factor: 41.582

2.  Identification of in vivo substrates of the chaperonin GroEL.

Authors:  W A Houry; D Frishman; C Eckerskorn; F Lottspeich; F U Hartl
Journal:  Nature       Date:  1999-11-11       Impact factor: 49.962

Review 3.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

4.  Detecting and measuring cotranslational protein degradation in vivo.

Authors:  G C Turner; A Varshavsky
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

Review 5.  Ribosome-associated chaperones as key players in proteostasis.

Authors:  Steffen Preissler; Elke Deuerling
Journal:  Trends Biochem Sci       Date:  2012-04-13       Impact factor: 13.807

6.  Folding in vivo of a newly translated yeast cytosolic enzyme is mediated by the SSA class of cytosolic yeast Hsp70 proteins.

Authors:  S Kim; B Schilke; E A Craig; A L Horwich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-27       Impact factor: 11.205

7.  Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin.

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Journal:  Cell       Date:  1998-05-29       Impact factor: 41.582

8.  The alpha and beta subunit of the nascent polypeptide-associated complex have distinct functions.

Authors:  B Beatrix; H Sakai; M Wiedmann
Journal:  J Biol Chem       Date:  2000-12-01       Impact factor: 5.157

9.  Mutation of the ATP-binding pocket of SSA1 indicates that a functional interaction between Ssa1p and Ydj1p is required for post-translational translocation into the yeast endoplasmic reticulum.

Authors:  A J McClellan; J L Brodsky
Journal:  Genetics       Date:  2000-10       Impact factor: 4.562

10.  bicaudal encodes the Drosophila beta NAC homolog, a component of the ribosomal translational machinery*.

Authors:  D C Markesich; K M Gajewski; M E Nazimiec; K Beckingham
Journal:  Development       Date:  2000-02       Impact factor: 6.868

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  118 in total

1.  HflX is a ribosome-splitting factor rescuing stalled ribosomes under stress conditions.

Authors:  Yanqing Zhang; Chandra Sekhar Mandava; Wei Cao; Xiaojing Li; Dejiu Zhang; Ningning Li; Yixiao Zhang; Xiaoxiao Zhang; Yan Qin; Kaixia Mi; Jianlin Lei; Suparna Sanyal; Ning Gao
Journal:  Nat Struct Mol Biol       Date:  2015-10-12       Impact factor: 15.369

2.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

3.  Dynamic enzyme docking to the ribosome coordinates N-terminal processing with polypeptide folding.

Authors:  Arzu Sandikci; Felix Gloge; Michael Martinez; Matthias P Mayer; Rebecca Wade; Bernd Bukau; Günter Kramer
Journal:  Nat Struct Mol Biol       Date:  2013-06-16       Impact factor: 15.369

4.  BAG3 regulates total MAP1LC3B protein levels through a translational but not transcriptional mechanism.

Authors:  Andrea E Rodríguez; Camila López-Crisosto; Daniel Peña-Oyarzún; Daniela Salas; Valentina Parra; Clara Quiroga; Tobias Morawe; Mario Chiong; Christian Behl; Sergio Lavandero
Journal:  Autophagy       Date:  2016       Impact factor: 16.016

5.  Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding.

Authors:  Kristina Döring; Nabeel Ahmed; Trine Riemer; Harsha Garadi Suresh; Yevhen Vainshtein; Markus Habich; Jan Riemer; Matthias P Mayer; Edward P O'Brien; Günter Kramer; Bernd Bukau
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

6.  N-terminal protein acetylation by NatB modulates the levels of Nmnats, the NAD+ biosynthetic enzymes in Saccharomyces cerevisiae.

Authors:  Trevor Croft; Padmaja Venkatakrishnan; Christol James Theoga Raj; Benjamin Groth; Timothy Cater; Michelle R Salemi; Brett Phinney; Su-Ju Lin
Journal:  J Biol Chem       Date:  2020-04-16       Impact factor: 5.157

7.  Inefficient SRP interaction with a nascent chain triggers a mRNA quality control pathway.

Authors:  Andrey L Karamyshev; Anna E Patrick; Zemfira N Karamysheva; Dustin S Griesemer; Henry Hudson; Sandra Tjon-Kon-Sang; IngMarie Nilsson; Hendrik Otto; Qinghua Liu; Sabine Rospert; Gunnar von Heijne; Arthur E Johnson; Philip J Thomas
Journal:  Cell       Date:  2014-01-16       Impact factor: 41.582

Review 8.  The Growing Toolbox for Protein Synthesis Studies.

Authors:  Shintaro Iwasaki; Nicholas T Ingolia
Journal:  Trends Biochem Sci       Date:  2017-05-28       Impact factor: 13.807

9.  An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability-Due to increased missense errors?

Authors:  Kristina Nilsson; Gunilla Jäger; Glenn R Björk
Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

10.  A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast.

Authors:  Søs G Mathiassen; Ida B Larsen; Esben G Poulsen; Christian T Madsen; Elena Papaleo; Kresten Lindorff-Larsen; Birthe B Kragelund; Michael L Nielsen; Franziska Kriegenburg; Rasmus Hartmann-Petersen
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

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