Literature DB >> 23389762

Symmetrisation schemes for global optimisation of atomic clusters.

Mark T Oakley1, Roy L Johnston, David J Wales.   

Abstract

Locating the global minima of atomic and molecular clusters can be a difficult optimisation problem. Here we report benchmarks for procedures that exploit approximate symmetry. This strategy was implemented in the GMIN program following a theoretical analysis, which explained why high-symmetry structures are more likely to have particularly high or particularly low energy. The analysis, and the corresponding algorithms, allow for approximate point group symmetry, and can be combined with basin-hopping and genetic algorithms. We report results for 38-, 75-, and 98-atom Lennard-Jones clusters, which are all multiple-funnel systems. Exploiting approximate symmetry reduces the mean time taken to locate the global minimum by up to two orders of magnitude, with smaller improvements in efficiency for LJ(55) and LJ(74), which correspond to simpler single-funnel energy landscapes.

Entities:  

Year:  2013        PMID: 23389762     DOI: 10.1039/c3cp44332a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Symmetric Molecular Dynamics.

Authors:  Sam Cox; Andrew D White
Journal:  J Chem Theory Comput       Date:  2022-06-14       Impact factor: 6.578

2.  A spin-1 representation for dual-funnel energy landscapes.

Authors:  Justin E Elenewski; Kirill A Velizhanin; Michael Zwolak
Journal:  J Chem Phys       Date:  2018-07-21       Impact factor: 3.488

3.  Superposition-Enhanced Estimation of Optimal Temperature Spacings for Parallel Tempering Simulations.

Authors:  Andrew J Ballard; David J Wales
Journal:  J Chem Theory Comput       Date:  2014-11-04       Impact factor: 6.006

4.  Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions.

Authors:  Maximilian N Bauer; Matt I J Probert; Chiara Panosetti
Journal:  J Phys Chem A       Date:  2022-05-06       Impact factor: 2.944

Review 5.  Towards operando computational modeling in heterogeneous catalysis.

Authors:  Lukáš Grajciar; Christopher J Heard; Anton A Bondarenko; Mikhail V Polynski; Jittima Meeprasert; Evgeny A Pidko; Petr Nachtigall
Journal:  Chem Soc Rev       Date:  2018-11-12       Impact factor: 54.564

6.  Three-Dimensional Assignment of the Structures of Atomic Clusters: an Example of Au8M (M=Si, Ge, Sn) Anion Clusters.

Authors:  Yi-Rong Liu; Teng Huang; Yan-Bo Gai; Yang Zhang; Ya-Juan Feng; Wei Huang
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

7.  Grand and Semigrand Canonical Basin-Hopping.

Authors:  F Calvo; D Schebarchov; D J Wales
Journal:  J Chem Theory Comput       Date:  2016-01-06       Impact factor: 6.006

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.