| Literature DB >> 23389090 |
Anna Maciejewska1, Jolanta Lukasiewicz, Marta Kaszowska, Aleksandra Man-Kupisinska, Wojciech Jachymek, Czeslaw Lugowski.
Abstract
The herein presented complete structure of the coreEntities:
Mesh:
Substances:
Year: 2013 PMID: 23389090 PMCID: PMC3640391 DOI: 10.3390/md11020440
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1MALDI-TOF mass spectra of the core oligosaccharides OSII (A), OSI (B) and fraction PSV (C) isolated from LPS of P. shigelloides PCM 2231 (serotype O17). Complete structure of the core OS substituted with one RU of the O-specific PS was presented as the inset structure with marked OSII, OSI and PSV fractions. Heterogeneity related residues are marked with asterisk. Spectra were obtained in the negative reflectron mode with 2,4,6-trihydroxyacetophenone as a matrix. m/z values represent monoisotopic masses.
1H and 13C NMR chemical shifts of the core oligosaccharide substituted with one RU of the O-specific PS of P. shigelloides PCM 2231 LPS (serotyp O17) (fraction PSV). Spectra were recorded for 2H2O solution at 27 °C. Acetone (δH 2.225, δC 31.05 ppm) was used as internal reference.
| Residue | Chemical shifts (ppm) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| H-1 | H-2 | H-3a,b | H-4 | H-5 | H-6a,b | H-7a,b | H-8a,b | ||
| C-1 | C-2 | C-3 | C-4 | C-5 | C-6 | C-7 | C-8, CH3CO | ||
| A | →4)-α-
| 5.33 | 3.83 | 4.25 | 4.36 | 4.53 | |||
| 102.1 | 69.2 | 69.0 | 80.1 | 72.3 | 175.6 | ||||
| A′ | →4)-α-
| 5.40 | 3.84 | 4.22 | 4.41 | 4.60 | |||
| 102.4 | 69.3 | 69.0 | 80.6 | 72.5 | 175.6 | ||||
| B | α-
| 5.24 | 3.22 | 3.91 | 3.50 | 4.11 | 3.81 a | ||
| 95.1 | 55.0 | 70.3 | 70.0 | 73.0 | 60.7 | ||||
| C | →6)-α- | 5.12 | 3.26 | 3.86 | 3.47 | 4.33 | 3.79, 4.08 | ||
| 97.0 | 54.9 | 70.3 | 70.0 | 71.6 | 68.6 | ||||
| D | →3,4)- | 5.11 | 4.04 | 4.13 | 4.23 | 4.17 | 4.17 | 3.72 b | |
| 101.3 | 71.1 | 75.3 | 75.1 | 72.0 | 69.2 | 63.8 | |||
| E | →4)-α- | 5.02 | 3.95 | 4.07 | 4.52 | 4.31 | |||
| 99.7 | 68.8 | 69.7 | 77.3 | 70.6 | 176.5 | ||||
| F | →7)- | 4.88 | 4.00 | 3.84 | 3.89 | 3.60 | 4.21 | 3.58, 3.82 | |
| 103.2 | 70.9 | 71.2 | 66.7 | 73.2 | 68.4 | 72.0 | |||
| G | β- | 4.59 | 3.22 | 3.51 | 3.45 | 3.59 | 3.78, 3.90 | ||
| 103.5 | 74.0 | 75.4 | 69.9 | 76.2 | 61.3 | ||||
| H | β-d-Gal | 4.51 | 3.50 | 3.62 | 3.95 | 3.66 | 3.69-3.74 b | ||
| 104.2 | 72.2 | 73.1 | 71.0 | 75.8 | 62.6 | ||||
| H′ | β-d-Gal | 4.45 | 3.55 | 3.64 | 3.91 | 3.64 | 3.69-3.74 b | ||
| 104.1 | 71.7 | 73.2 | 69.6 | 76.0 | 62.6 | ||||
| K | →5)-Kdo | 1.86, 2.22 | 4.12 | 4.13 | 3.70 | 3.86 | 3.60, 3.84 | ||
| nd | nd | 34.4 | 66.4 | 75.3 | 70.0 | 72.1 | 64.1 | ||
| L | →3,7)- | 5.28 | 4.18 | 3.99 | 4.01 | 3.60 | 4.14 | 3.55, 3.95 | |
| 101.8 | 70.2 | 81.9 | 65.6 | 73.2 | 69.1 | 73.5 | |||
| L′ | →2,3,7)- | 5.38 | 4.22 | 4.10 | 4.04 | 3.60 | 4.14 | 3.56, 3.94 | |
| 99.7 | 78.9 | 79.3 | 66.4 | 73.2 | 69.1 | 73.6 | |||
| M | →3)-β-d-Fuc | 4.57 | 3.83 | 4.16 | 3.98 | 4.09 | 1.32 | 2.07 | |
| 101.9 | 51.6 | 76.5 | 55.4 | 68.1 | 16.3 | 23.0, 174.7 | |||
| N | →4)-β- | 4.48 | 3.75 | 3.68 | 3.65 | 3.49 | 3.63, 3.82 | 2.06 | |
| 102.2 | 55.9 | 73.0 | 79.1 | 75.3 | 60.8 | 23.0, 175.4 | |||
| O | α-l-Alt | 4.88 | 3.97 | 3.66 | 4.38 | 4.41 | 2.00 | ||
| 101.7 | 52.2 | 68.8 | 69.9 | 78.7 | 175.4 | 23.0, 175.3 | |||
a, b Not resolved; nd: Not determined.
Figure 2.600 MHz HSQC-DEPT spectrum of the core OS substituted with one RU of the O-specific PS of P. shigelloides PCM 2231 (serotype O17) (fraction PSV). The inset shows the anomeric region of the spectrum. The uppercase letters refer to designations of carbohydrate residues. The spectra were obtained for 2H2O suspensions at 27 °C.
Selected 3JH,C-connectivities from the anomeric atoms of the core OS substituted with one RU of the O-specific PS of P. shigelloides PCM 2231 LPS (serotype O17).
| Residue | Atom H-1/C-1 (ppm) | Connectivities to | Inter-Residue atom/residue | ||
|---|---|---|---|---|---|
| δH | δC | ||||
| A | →4)-α- | 5.33/102.1 | 3.99 | nd | H-3 of
|
| B | α- | 5.24/95.1 | 4.52 | nd | H-4 of
|
| C | →6)-α- | 5.12/97.0 | 4.36 | 80.1 | H-4, C-4 of
|
| D | →3,4)- | 5.11/101.3 | 4.13 | 75.3 | H-5, C-5 of
|
| E | →4)-α- | 5.02/99.7 | 3.58 | 71.9 | H-7a, C-7 of
|
| F | →7)- | 4.88/103.2 | 3.95 | 73.5 | H-7b, C-7 of
|
| G | β- | 4.59/103.5 | nd | 78.9 | C-2 of
|
| H | β- | 4.51/104.2 | 4.23 | 75.1 | H-4, C-4 of
|
| L | →3,7)- | 5.28/101.2 | 4.13 | 75.3 | H-3, C-3 of
|
| M | →3)-β- | 4.57/101.9 | 3.65 | 79.1 | H-4, C-4 of
|
| N | →4)-β- | 4.48/102.2 | 3.79, 4.08 | 68.6 | H-6a, H-6b, C-6 of
|
| O | α-l-Alt | 4.88/101.7 | 4.16 | 76.5 | H-3, C-3 of
|
nd: Not determined.
Figure 3LPSs were analysed by SDS-PAGE (3 μg/lane), using a 15% separating gel, and visualized by the silver staining method (A). Reactivities of serum (200-fold diluted) against the OSI-BSA conjugate with P. shigelloides LPSs in immunoblotting (B).