Literature DB >> 23385753

Crystallization and preliminary X-ray analysis of L-serine 3-dehydrogenase complexed with NADP+ from the hyperthermophilic archaeon Pyrobaculum calidifontis.

Kazunari Yoneda1, Haruhiko Sakuraba, Tomohiro Araki, Takeshi Shibata, Takahiro Nikki, Toshihisa Ohshima.   

Abstract

An NAD(P)(+)-dependent L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis was crystallized using the sitting-drop vapour-diffusion method with ammonium sulfate as the precipitant. The crystals belonged to the monoclinic space group C2, with unit-cell parameters a = 120.81, b = 57.40, c = 56.37 Å, β = 106.88°. Diffraction data were collected to 1.57 Å resolution on beamline NE3A at the Photon Factory. The overall R(merge) was 4.2% and the data completeness was 90.1%.

Entities:  

Keywords:  Pyrobaculum calidifontis; archaea; hyperthermophile; l-serine 3-dehydrogenase

Mesh:

Substances:

Year:  2013        PMID: 23385753      PMCID: PMC3564614          DOI: 10.1107/S1744309112051391

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  7 in total

1.  Cloning and sequencing of the serine dehydrogenase gene from Agrobacterium tumefaciens.

Authors:  Hisae Fujisawa; Shinji Nagata; Emran Kabir Chowdhury; Miki Matsumoto; Haruo Misono
Journal:  Biosci Biotechnol Biochem       Date:  2002-05       Impact factor: 2.043

2.  Crystal structure of serine dehydrogenase from Escherichia coli: important role of the C-terminal region for closed-complex formation.

Authors:  Ryuji Yamazawa; Yoshitaka Nakajima; Karin Mushiake; Tadashi Yoshimoto; Kiyoshi Ito
Journal:  J Biochem       Date:  2011-02-23       Impact factor: 3.387

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  [The enzyme catalyzing the reductive amination of oxypyruvate].

Authors:  V L Kretovich; K M Stepanovich
Journal:  Izv Akad Nauk SSSR Biol       Date:  1966 Mar-Apr

5.  Biochemical and structural studies of uncharacterized protein PA0743 from Pseudomonas aeruginosa revealed NAD+-dependent L-serine dehydrogenase.

Authors:  Anatoli Tchigvintsev; Alexander Singer; Greg Brown; Robert Flick; Elena Evdokimova; Kemin Tan; Claudio F Gonzalez; Alexei Savchenko; Alexander F Yakunin
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

6.  A novel NADP(+)-dependent serine dehydrogenase from Agrobacterium tumefaciens.

Authors:  E K Chowdhury; K Higuchi; S Nagata; H Misono
Journal:  Biosci Biotechnol Biochem       Date:  1997-01       Impact factor: 2.043

7.  Characterization of short-chain dehydrogenase/reductase homologues of Escherichia coli (YdfG) and Saccharomyces cerevisiae (YMR226C).

Authors:  Hisae Fujisawa; Shinji Nagata; Haruo Misono
Journal:  Biochim Biophys Acta       Date:  2003-01-31
  7 in total
  1 in total

1.  Crystal structure of the NADP+ and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis.

Authors:  Kazunari Yoneda; Haruhiko Sakuraba; Tomohiro Araki; Toshihisa Ohshima
Journal:  Extremophiles       Date:  2018-01-20       Impact factor: 2.395

  1 in total

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