Literature DB >> 23385571

Genome of the Chinese tree shrew.

Yu Fan1, Zhi-Yong Huang, Chang-Chang Cao, Ce-Shi Chen, Yuan-Xin Chen, Ding-Ding Fan, Jing He, Hao-Long Hou, Li Hu, Xin-Tian Hu, Xuan-Ting Jiang, Ren Lai, Yong-Shan Lang, Bin Liang, Sheng-Guang Liao, Dan Mu, Yuan-Ye Ma, Yu-Yu Niu, Xiao-Qing Sun, Jin-Quan Xia, Jin Xiao, Zhi-Qiang Xiong, Lin Xu, Lan Yang, Yun Zhang, Wei Zhao, Xu-Dong Zhao, Yong-Tang Zheng, Ju-Min Zhou, Ya-Bing Zhu, Guo-Jie Zhang, Jun Wang, Yong-Gang Yao.   

Abstract

Chinese tree shrews (Tupaia belangeri chinensis) possess many features valuable in animals used as experimental models in biomedical research. Currently, there are numerous attempts to employ tree shrews as models for a variety of human disorders: depression, myopia, hepatitis B and C virus infections, and hepatocellular carcinoma, to name a few. Here we present a publicly available annotated genome sequence for the Chinese tree shrew. Phylogenomic analysis of the tree shrew and other mammalians highly support its close affinity to primates. By characterizing key factors and signalling pathways in nervous and immune systems, we demonstrate that tree shrews possess both shared common and unique features, and provide a genetic basis for the use of this animal as a potential model for biomedical research.

Entities:  

Mesh:

Year:  2013        PMID: 23385571     DOI: 10.1038/ncomms2416

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  56 in total

1.  Theophylline improves steroid sensitivity in acute alcoholic hepatitis.

Authors:  Stuart F W Kendrick; Elsbeth Henderson; Jeremy Palmer; David E J Jones; Chris P Day
Journal:  Hepatology       Date:  2010-07       Impact factor: 17.425

2.  Evolution of cyclophilin A and TRIMCyp retrotransposition in New World primates.

Authors:  Ieda P Ribeiro; Albert N Menezes; Miguel A M Moreira; Cibele R Bonvicino; Héctor N Seuánez; Marcelo A Soares
Journal:  J Virol       Date:  2005-12       Impact factor: 5.103

Review 3.  Genetic, structural and functional diversities of human complement components C4A and C4B and their mouse homologues, Slp and C4.

Authors:  C A Blanchong; E K Chung; K L Rupert; Y Yang; Z Yang; B Zhou; J M Moulds; C Y Yu
Journal:  Int Immunopharmacol       Date:  2001-03       Impact factor: 4.932

4.  Unique features of TRIM5alpha among closely related human TRIM family members.

Authors:  Xing Li; Bert Gold; Colm O'hUigin; Felipe Diaz-Griffero; Byeongwoon Song; Zhihai Si; Yuan Li; Wen Yuan; Matthew Stremlau; Claudia Mische; Hassan Javanbakht; Mark Scally; Cheryl Winkler; Michael Dean; Joseph Sodroski
Journal:  Virology       Date:  2006-12-06       Impact factor: 3.616

5.  Influence of life stress on depression: moderation by a polymorphism in the 5-HTT gene.

Authors:  Avshalom Caspi; Karen Sugden; Terrie E Moffitt; Alan Taylor; Ian W Craig; HonaLee Harrington; Joseph McClay; Jonathan Mill; Judy Martin; Antony Braithwaite; Richie Poulton
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

6.  Rhodopsin mutations in autosomal dominant retinitis pigmentosa.

Authors:  C H Sung; C M Davenport; J C Hennessey; I H Maumenee; S G Jacobson; J R Heckenlively; R Nowakowski; G Fishman; P Gouras; J Nathans
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-01       Impact factor: 11.205

7.  Molecular and genomic data identify the closest living relative of primates.

Authors:  Jan E Janecka; Webb Miller; Thomas H Pringle; Frank Wiens; Annette Zitzmann; Kristofer M Helgen; Mark S Springer; William J Murphy
Journal:  Science       Date:  2007-11-02       Impact factor: 47.728

8.  Melanopsin and rod-cone photoreceptive systems account for all major accessory visual functions in mice.

Authors:  S Hattar; R J Lucas; N Mrosovsky; S Thompson; R H Douglas; M W Hankins; J Lem; M Biel; F Hofmann; R G Foster; K-W Yau
Journal:  Nature       Date:  2003-06-15       Impact factor: 49.962

Review 9.  Cytochrome p450 and chemical toxicology.

Authors:  F Peter Guengerich
Journal:  Chem Res Toxicol       Date:  2007-12-06       Impact factor: 3.739

10.  A high-resolution map of human evolutionary constraint using 29 mammals.

Authors:  Kerstin Lindblad-Toh; Manuel Garber; Or Zuk; Michael F Lin; Brian J Parker; Stefan Washietl; Pouya Kheradpour; Jason Ernst; Gregory Jordan; Evan Mauceli; Lucas D Ward; Craig B Lowe; Alisha K Holloway; Michele Clamp; Sante Gnerre; Jessica Alföldi; Kathryn Beal; Jean Chang; Hiram Clawson; James Cuff; Federica Di Palma; Stephen Fitzgerald; Paul Flicek; Mitchell Guttman; Melissa J Hubisz; David B Jaffe; Irwin Jungreis; W James Kent; Dennis Kostka; Marcia Lara; Andre L Martins; Tim Massingham; Ida Moltke; Brian J Raney; Matthew D Rasmussen; Jim Robinson; Alexander Stark; Albert J Vilella; Jiayu Wen; Xiaohui Xie; Michael C Zody; Jen Baldwin; Toby Bloom; Chee Whye Chin; Dave Heiman; Robert Nicol; Chad Nusbaum; Sarah Young; Jane Wilkinson; Kim C Worley; Christie L Kovar; Donna M Muzny; Richard A Gibbs; Andrew Cree; Huyen H Dihn; Gerald Fowler; Shalili Jhangiani; Vandita Joshi; Sandra Lee; Lora R Lewis; Lynne V Nazareth; Geoffrey Okwuonu; Jireh Santibanez; Wesley C Warren; Elaine R Mardis; George M Weinstock; Richard K Wilson; Kim Delehaunty; David Dooling; Catrina Fronik; Lucinda Fulton; Bob Fulton; Tina Graves; Patrick Minx; Erica Sodergren; Ewan Birney; Elliott H Margulies; Javier Herrero; Eric D Green; David Haussler; Adam Siepel; Nick Goldman; Katherine S Pollard; Jakob S Pedersen; Eric S Lander; Manolis Kellis
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

View more
  126 in total

Review 1.  Ground squirrel - A cool model for a bright vision.

Authors:  Wei Li
Journal:  Semin Cell Dev Biol       Date:  2020-06-24       Impact factor: 7.727

2.  Neural coding of image structure and contrast polarity of Cartesian, hyperbolic, and polar gratings in the primary and secondary visual cortex of the tree shrew.

Authors:  Jordan Poirot; Paolo De Luna; Gregor Rainer
Journal:  J Neurophysiol       Date:  2016-02-03       Impact factor: 2.714

Review 3.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

Review 4.  Biomechanical aspects of axonal damage in glaucoma: A brief review.

Authors:  Cheri Stowell; Claude F Burgoyne; Ernst R Tamm; C Ross Ethier
Journal:  Exp Eye Res       Date:  2017-02-20       Impact factor: 3.467

Review 5.  Vaccine development for human mastadenovirus.

Authors:  Shiying Chen; Xingui Tian
Journal:  J Thorac Dis       Date:  2018-07       Impact factor: 2.895

6.  Herpes Simplex Virus 1 Infection of Tree Shrews Differs from That of Mice in the Severity of Acute Infection and Viral Transcription in the Peripheral Nervous System.

Authors:  Lihong Li; Zhuoran Li; Erlin Wang; Rui Yang; Yu Xiao; Hongbo Han; Fengchao Lang; Xin Li; Yujie Xia; Feng Gao; Qihan Li; Nigel W Fraser; Jumin Zhou
Journal:  J Virol       Date:  2015-10-28       Impact factor: 5.103

7.  Loss of RIG-I leads to a functional replacement with MDA5 in the Chinese tree shrew.

Authors:  Ling Xu; Dandan Yu; Yu Fan; Li Peng; Yong Wu; Yong-Gang Yao
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-12       Impact factor: 11.205

8.  Establishment of Neurobehavioral Assessment System in Tree Shrew SCT Model.

Authors:  Yang-Yang Wang; Jie-Dong Wang; Lei Wang; Qi-Qin Dan; Qing-Jie Xia; Ting-Hua Wang; Liu-Lin Xiong
Journal:  J Mol Neurosci       Date:  2019-12-16       Impact factor: 3.444

9.  Long-term propagation of tree shrew spermatogonial stem cells in culture and successful generation of transgenic offspring.

Authors:  Chao-Hui Li; Lan-Zhen Yan; Wen-Zan Ban; Qiu Tu; Yong Wu; Lin Wang; Rui Bi; Shuang Ji; Yu-Hua Ma; Wen-Hui Nie; Long-Bao Lv; Yong-Gang Yao; Xu-Dong Zhao; Ping Zheng
Journal:  Cell Res       Date:  2016-12-23       Impact factor: 25.617

10.  Positively selected genes of the Chinese tree shrew (Tupaia belangeri chinensis) locomotion system.

Authors:  Yu Fan; Dan-Dan Yu; Yong-Gang Yao
Journal:  Dongwuxue Yanjiu       Date:  2014-05
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.