| Literature DB >> 23382898 |
Bohdan Nosyk1, Guillaume Colley, Benita Yip, Keith Chan, Katherine Heath, Viviane D Lima, Mark Gilbert, Robert S Hogg, P Richard Harrigan, Julio S G Montaner.
Abstract
OBJECTIVE: To define a population-level cohort of individuals infected with the human immunodeficiency virus (HIV) in the province of British Columbia from available registries and administrative datasets using a validated case-finding algorithm.Entities:
Mesh:
Year: 2013 PMID: 23382898 PMCID: PMC3557280 DOI: 10.1371/journal.pone.0054416
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Descriptions of databases used for cohort validation.
| Database | Description |
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| The treatment program and clinical databases held at the BC-CfE include information on all individuals who have ever received antiretroviral treatment for HIV, including complete historical antiretroviral treatment records, HIV-related laboratory test records (80% of all CD4 tests provincially, all pVL, drug resistance tests), as well as information on demographics and mode of HIV transmission. |
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| The BC provincial HIV/AIDS surveillance database contains records of all individuals with a positive HIV test done in BC. It also captures information collected through an enhanced surveillance form for all persons with a newly diagnosed HIV infection. |
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| The MSP database includes records of all medical services provided by fee-for-service practitioners to individuals covered by British Columbia's Medical Insurance Plan (MSP) including laboratory and diagnostic procedures. It also includes encounter records for practitioners who are funded through areas such as Alternative Payment Branch (APP) or Primary care for the Population Based Funding (PBF) sites and claims records for the fee for service payments processed by MSP for the Insurance Corporation of British Columbia (ICBC) and Worksafe BC (WSBC). The dataset includes information on the dates, diagnoses, and types of outpatient care delivered throughout the study period, as well as the costs billed to the provincial Ministry of Health. Physician fee for service claims are reimbursed at the rates listed in the Medical Services Commission (MSC) Payment Schedule in accordance with the Schedule's Preamble rules. |
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| Records for hospital discharges are included in the DAD file from the BC Ministry of Health. The DAD contains demographic, administrative and clinical information for acute, rehabilitation and day surgery patients in acute care hospitals in BC. The DAD does not include records for outpatient services such as emergency, clinic, diagnostic imaging and laboratory services. |
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| The BC PharmaNet database records all prescription drug dispensation in British Columbia. Data fields available included a de-identified patient ID, quantity dispensed (number of pills dispensed), de-identified prescriber code, cost of drugs dispensed, drug identification number, the date of the prescription, the length of the prescription (number of days supplied), drug dosage (quantity), de-identified prescriber code and the cost of drugs dispensed. Further information about the medication is also available including the generic code number (gcn) sequence number and American Hospital Formulary Service (AHFS) code (codes for grouping similar medications), name of the active ingredient, name of the product, dosage of the product and form of the medication (pill, capsule, etc.) |
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| The BC Vital Statistics database includes fields on the date of death (year and month) as well as ICD-9 and ICD-10 codes identifying probable cause of death. |
Figure 1Flow diagram of the STOP HIV/AIDS cohort selection process.
CDC: BC Centre for Disease Control; MoH: BC Ministry of Health Datasets (including Discharge Abstract Database, Medical Services Plan and PharmaNet databases); CfE: BC Centre for Excellence in HIV/AIDS. † identified with at least one record of the following: HIV positive test (CDC), HIV-related hospitalization or physician claim (MoH), pVL test, CD4 test, AIDS-defining illness or HAART dispensation (CfE). * Cases with one or more undetectable pVL tests, with no other HIV-related records. ** Identified with at least one HIV-related MoH record but no other HIV-related records in the CDC or CfE databases; *** Identified with confirmed positive HIV test, a pVL test with detectable viral load or antiretroviral dispensation.
Comparison of case-finding algorithms.
| Algorithm Description | Identified cases among Unconfirmed HIV cases | Algorithm sensitivity among gold standard HIV cases |
| N = 9,454 | N = 5,039 | |
| Algorithm 1: | 803 (8.5%) | 3,951 (78.4%) |
| 3 physician claims | ||
| Algorithm 2: | 849 (9.0%) | 4,435 (88.0%) |
| 3 physician claims OR 1 hospital admission | ||
| Algorithm 3: | 1,665 (17.6%) | 4,537 (90.0%) |
| 2 physician claims OR 1 hospital admission | ||
| Algorithm 4: | 9,454 (100.0%) | 4,665 (92.6%) |
| 1 physician claim OR 1 hospital admission |
CfE: BC Centre for Excellence in HIV/AIDS Drug Treatment Program or Laboratory Program Datasets. MoH: BC Ministry of Health datasets (including discharge abstract datasets (DAD - hospitalizations), PharmaNet (drug dispensation) and Master Services Plan (MSP - physician billing) datasets. CDC: BC Centre for Disease Control HIV testing dataset.
Identified with at least one HIV-related MoH record but no other HIV-related records in the CDC or CfE databases;
Identified with confirmed positive HIV test, a pVL test with detectable viral load or antiretroviral dispensation, and with records in each of the CfE, CDC and MoH databases.
Comparison of demographics and health service utilization across categories of cases considered for inclusion into the STOP HIV/AIDS cohort.
| Excluded in algorithms 2, 3 | P-value | Included in algorithm 3, Excluded in algorithm 2 | P-value | Included in algorithm 2 | P-value | Gold standard cohort | |
| N | 7,889 | 816 | 849 | 5,039 | |||
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| Age [Median (IQR)] | 41 (27, 59) | <0.01 | 42 (29, 59) | <0.01 | 44 (35, 55) | 0.95 | 44 (38, 51) |
| Male gender [N (%)] | 3,838 (49.2) | <0.01 | 454 (55.64) | <0.01 | 569 (67) | <0.01 | 3,904 (77.5) |
| Mortality rate | 1.74/100PY | <0.01 | 2.18/100PY | <0.01 | 3.2/100PY | 0.80 | 3.14/100PY |
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| PharmaNet: days/100PY meds dispensed | 8,514 (1,476, 29,338) | <0.01 | 9,745 (1,608, 31,718) | <0.01 | 16,335 (3,529, 44,123) | <0.01 | 10,266 (3,118, 25,268) |
| MSP: N/100PY of physician billings | 548 (231, 1,234) | <0.01 | 602 (225, 1,460) | <0.01 | 702 (230, 2,013) | <0.01 | 2,056 (1,179, 3,341) |
| DAD: days/100PY in hospital | 24 (10, 109) | <0.01 | 29 (10, 139) | <0.01 | 88 (20, 455) | 0.89 | 98 (23, 335) |
MSP: Medical Services Plan; CDC: BC Centre for Disease Control; MoH: BC Ministry of Health Datasets (including DAD, MSP); IQR: Interquartile range.
Compared to the confirmed HIV cases with records in CfE, CDC, MoH databases.
Identified with confirmed positive HIV test, a pVL test with detectable viral load or antiretroviral dispensation, and with records in each of the CfE, CDC and MoH databases.
Included in algorithm 3 (N = 1665) Excluded in algorithm 2 (N = 849); 1665−849 = 816.
Figure 2Mortality rates across categories of cases considered for inclusion into the STOP HIV/AIDS cohort.
MoH: BC Ministry of Health; CfE: BC Centre for Excellence in HIV/AIDS; CDC: BC Centre for Disease Control. * Identified with confirmed positive HIV test, a pVL test with detectable viral load or antiretroviral dispensation.