Literature DB >> 23378657

Gel purification of RNA.

Timothy W Nilsen.   

Abstract

For many applications, including size selection of RNAs and purification of in vitro transcription products, it is necessary to purify RNAs on a denaturing gel. This procedure describes how to purify transcripts that have been synthesized in vitro. It is useful for labeled or unlabeled RNAs when sufficient mass is present. It can also be used to isolate small RNAs. In general, RNA purification by denaturing gel electrophoresis is practical only when the size of the desired RNA is 600 nucleotides or less.

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Year:  2013        PMID: 23378657     DOI: 10.1101/pdb.prot072942

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  12 in total

1.  The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity.

Authors:  Nicholas V Parsonnet; Nickolaus C Lammer; Zachariah E Holmes; Robert T Batey; Deborah S Wuttke
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

2.  The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman.

Authors:  Niralee Patel; Mrinalini Nair
Journal:  J Microbiol       Date:  2021-09-23       Impact factor: 3.422

Review 3.  Codon-Reduced Protein Synthesis With Manipulating tRNA Components in Cell-Free System.

Authors:  Jiaojiao Li; Mengtong Tang; Hao Qi
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13

4.  Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism.

Authors:  Grecia M Gonzalez; Svetlana Durica-Mitic; Steven W Hardwick; Martin C Moncrieffe; Marcus Resch; Piotr Neumann; Ralf Ficner; Boris Görke; Ben F Luisi
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

5.  Immiscible phase filter extraction and equivalent amplification of genotypes 1-6 of hepatitis C RNA: The building blocks for point-of-care diagnosis.

Authors:  Mário F Neto; Matthew A Butzler; Jennifer L Reed; Xiang Rui; Mark J Fisher; David M Kelso; Sally M McFall
Journal:  J Virol Methods       Date:  2017-06-30       Impact factor: 2.014

6.  Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA.

Authors:  Lijun Zhou; Jing Hang; Yulin Zhou; Ruixue Wan; Guifeng Lu; Ping Yin; Chuangye Yan; Yigong Shi
Journal:  Nature       Date:  2013-11-17       Impact factor: 49.962

7.  A multidimensional platform for the purification of non-coding RNA species.

Authors:  Yok Hian Chionh; Chia-Hua Ho; Dumnoensun Pruksakorn; I Ramesh Babu; Chee Sheng Ng; Fabian Hia; Megan E McBee; Dan Su; Yan Ling Joy Pang; Chen Gu; Hongping Dong; Erin G Prestwich; Pei-Yong Shi; Peter Rainer Preiser; Sylvie Alonso; Peter C Dedon
Journal:  Nucleic Acids Res       Date:  2013-08-01       Impact factor: 16.971

8.  Stem-Loop RT-qPCR as an Efficient Tool for the Detection and Quantification of Small RNAs in Giardia lamblia.

Authors:  Jaime Marcial-Quino; Saúl Gómez-Manzo; Francisco Fierro; America Vanoye-Carlo; Yadira Rufino-González; Edgar Sierra-Palacios; Adriana Castillo-Villanueva; Rosa Angélica Castillo-Rodríguez; Eduardo Rodríguez-Bustamante; Roberto Arreguin-Espinosa; Horacio Reyes-Vivas
Journal:  Genes (Basel)       Date:  2016-12-20       Impact factor: 4.096

9.  RNAi-Mediated Specific Gene Silencing as a Tool for the Discovery of New Drug Targets in Giardia lamblia; Evaluation Using the NADH Oxidase Gene.

Authors:  Jaime Marcial-Quino; Saúl Gómez-Manzo; Francisco Fierro; Yadira Rufino-González; Daniel Ortega-Cuellar; Edgar Sierra-Palacios; America Vanoye-Carlo; Abigail González-Valdez; Angélica Torres-Arroyo; Jesús Oria-Hernández; Horacio Reyes-Vivas
Journal:  Genes (Basel)       Date:  2017-11-03       Impact factor: 4.096

10.  The 5΄ UTR of the type I toxin ZorO can both inhibit and enhance translation.

Authors:  Jia Wen; John R Harp; Elizabeth M Fozo
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

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