Literature DB >> 2337596

Quantitative footprinting analysis. Binding to a single site.

R Rehfuss1, J Goodisman, J C Dabrowiak.   

Abstract

The theory for measuring ligand binding constants from footprinting autoradiographic data associated with a single binding site is derived. If the ligand and DNA cleavage agent compete for a common site, the spot intensities are not proportional to the amount of DNA not blocked by ligand. The analysis of a single site is experimentally illustrated by using results for the anticancer drug actinomycin D interacting with the duplex d(TAGCGCTA)2 as probed with the hydrolytic enzyme DNase I.

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Year:  1990        PMID: 2337596     DOI: 10.1021/bi00455a027

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  4 in total

1.  The 2-amino group of guanine is absolutely required for specific binding of the anti-cancer antibiotic echinomycin to DNA.

Authors:  C Marchand; C Bailly; M J McLean; S E Moroney; M J Waring
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

2.  Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents.

Authors:  C A Laughton; T C Jenkins; K R Fox; S Neidle
Journal:  Nucleic Acids Res       Date:  1990-08-11       Impact factor: 16.971

3.  Thioester Bonds of Thiocoraline Can Be Replaced with NMe-Amide Bridges without Affecting Its DNA-Binding Properties.

Authors:  Rubí Zamudio-Vázquez; Fernando Albericio; Judit Tulla-Puche; Keith R Fox
Journal:  ACS Med Chem Lett       Date:  2013-11-04       Impact factor: 4.345

4.  Type IIS restriction enzyme footprinting I. Measurement of a triple helix dissociation constant with Eco57I at 25 degrees C.

Authors:  B Ward
Journal:  Nucleic Acids Res       Date:  1996-06-15       Impact factor: 16.971

  4 in total

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