Literature DB >> 23374032

Filming the birth of molecules and accompanying solvent rearrangement.

Jae Hyuk Lee1, Michael Wulff, Savo Bratos, Jakob Petersen, Laurent Guerin, Jean-Claude Leicknam, Marco Cammarata, Qingyu Kong, Jeongho Kim, Klaus B Møller, Hyotcherl Ihee.   

Abstract

Molecules are often born with high energy and large-amplitude vibrations. In solution, a newly formed molecule cools down by transferring energy to the surrounding solvent molecules. The progression of the molecular and solute-solvent cage structure during this fundamental process has been elusive, and spectroscopic data generally do not provide such structural information. Here, we use picosecond X-ray liquidography (solution scattering) to visualize time-dependent structural changes associated with the vibrational relaxation of I(2) molecules in two different solvents, CCl(4) and cyclohexane. The birth and vibrational relaxation of I(2) molecules and the associated rearrangement of solvent molecules are mapped out in the form of a temporally varying interatomic distance distribution. The I-I distance increases up to ~4 Å and returns to the equilibrium distance (2.67 Å) in the ground state, and the first solvation cage expands by ~1.5 Å along the I-I axis and then shrinks back accompanying the structural change of the I(2) molecule.

Entities:  

Year:  2013        PMID: 23374032     DOI: 10.1021/ja312513w

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

1.  Combined probes of X-ray scattering and optical spectroscopy reveal how global conformational change is temporally and spatially linked to local structural perturbation in photoactive yellow protein.

Authors:  Tae Wu Kim; Cheolhee Yang; Youngmin Kim; Jong Goo Kim; Jeongho Kim; Yang Ouk Jung; Sunhong Jun; Sang Jin Lee; Sungjun Park; Irina Kosheleva; Robert Henning; Jasper J van Thor; Hyotcherl Ihee
Journal:  Phys Chem Chem Phys       Date:  2016-04-07       Impact factor: 3.676

2.  Sub-100-ps structural dynamics of horse heart myoglobin probed by time-resolved X-ray solution scattering.

Authors:  Key Young Oang; Kyung Hwan Kim; Junbeom Jo; Youngmin Kim; Jong Goo Kim; Tae Wu Kim; Sunhong Jun; Jeongho Kim; Hyotcherl Ihee
Journal:  Chem Phys       Date:  2014-10-17       Impact factor: 2.348

3.  Visualizing the non-equilibrium dynamics of photoinduced intramolecular electron transfer with femtosecond X-ray pulses.

Authors:  Sophie E Canton; Kasper S Kjær; György Vankó; Tim B van Driel; Shin-ichi Adachi; Amélie Bordage; Christian Bressler; Pavel Chabera; Morten Christensen; Asmus O Dohn; Andreas Galler; Wojciech Gawelda; David Gosztola; Kristoffer Haldrup; Tobias Harlang; Yizhu Liu; Klaus B Møller; Zoltán Németh; Shunsuke Nozawa; Mátyás Pápai; Tokushi Sato; Takahiro Sato; Karina Suarez-Alcantara; Tadashi Togashi; Kensuke Tono; Jens Uhlig; Dimali A Vithanage; Kenneth Wärnmark; Makina Yabashi; Jianxin Zhang; Villy Sundström; Martin M Nielsen
Journal:  Nat Commun       Date:  2015-03-02       Impact factor: 14.919

4.  Atomistic characterization of the active-site solvation dynamics of a model photocatalyst.

Authors:  Tim B van Driel; Kasper S Kjær; Robert W Hartsock; Asmus O Dohn; Tobias Harlang; Matthieu Chollet; Morten Christensen; Wojciech Gawelda; Niels E Henriksen; Jong Goo Kim; Kristoffer Haldrup; Kyung Hwan Kim; Hyotcherl Ihee; Jeongho Kim; Henrik Lemke; Zheng Sun; Villy Sundström; Wenkai Zhang; Diling Zhu; Klaus B Møller; Martin M Nielsen; Kelly J Gaffney
Journal:  Nat Commun       Date:  2016-11-28       Impact factor: 14.919

5.  SVD-aided pseudo principal-component analysis: A new method to speed up and improve determination of the optimum kinetic model from time-resolved data.

Authors:  Key Young Oang; Cheolhee Yang; Srinivasan Muniyappan; Jeongho Kim; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2017-04-05       Impact factor: 2.920

6.  Vibrational wavepacket dynamics in Fe carbene photosensitizer determined with femtosecond X-ray emission and scattering.

Authors:  Kristjan Kunnus; Morgane Vacher; Tobias C B Harlang; Kasper S Kjær; Kristoffer Haldrup; Elisa Biasin; Tim B van Driel; Mátyás Pápai; Pavel Chabera; Yizhu Liu; Hideyuki Tatsuno; Cornelia Timm; Erik Källman; Mickaël Delcey; Robert W Hartsock; Marco E Reinhard; Sergey Koroidov; Mads G Laursen; Frederik B Hansen; Peter Vester; Morten Christensen; Lise Sandberg; Zoltán Németh; Dorottya Sárosiné Szemes; Éva Bajnóczi; Roberto Alonso-Mori; James M Glownia; Silke Nelson; Marcin Sikorski; Dimosthenis Sokaras; Henrik T Lemke; Sophie E Canton; Klaus B Møller; Martin M Nielsen; György Vankó; Kenneth Wärnmark; Villy Sundström; Petter Persson; Marcus Lundberg; Jens Uhlig; Kelly J Gaffney
Journal:  Nat Commun       Date:  2020-01-31       Impact factor: 14.919

Review 7.  Topical Review: Molecular reaction and solvation visualized by time-resolved X-ray solution scattering: Structure, dynamics, and their solvent dependence.

Authors:  Kyung Hwan Kim; Jeongho Kim; Jae Hyuk Lee; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2014-02-11       Impact factor: 2.920

8.  Solvent-dependent complex reaction pathways of bromoform revealed by time-resolved X-ray solution scattering and X-ray transient absorption spectroscopy.

Authors:  Qingyu Kong; Dmitry Khakhulin; Ilya A Shkrob; Jae Hyuk Lee; Xiaoyi Zhang; Jeongho Kim; Kyung Hwan Kim; Junbeom Jo; Jungmin Kim; Jaedong Kang; Van-Thai Pham; Guy Jennings; Charles Kurtz; Rick Spence; Lin X Chen; Michael Wulff; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2019-12-24       Impact factor: 2.920

9.  Gold Nanoparticle Formation via X-ray Radiolysis Investigated with Time-Resolved X-ray Liquidography.

Authors:  Hosung Ki; Sungjun Park; Seunghwan Eom; Jain Gu; Siin Kim; Changwon Kim; Chi Woo Ahn; Minseo Choi; Sena Ahn; Doo-Sik Ahn; Jungkweon Choi; Mu-Hyun Baik; Hyotcherl Ihee
Journal:  Int J Mol Sci       Date:  2020-09-27       Impact factor: 5.923

  9 in total

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