Literature DB >> 23368390

Small-number effects: a third stable state in a genetic bistable toggle switch.

Rui Ma1, Jichao Wang, Zhonghuai Hou, Haiyan Liu.   

Abstract

A genetic toggle switch was studied experimentally and theoretically. We have found an additional kinetic stable state where all the genes express very lowly, which is predicted to be unstable by dynamical systems theory. It can also stably coexist with the other two known stable states, although this coexistence is forbidden in a deterministic dynamical system. We analyze that this nontrivial phenomenon results from the discrete and fluctuate nature in such a small system, by comparing experimental results with modeling results of exact stochastic simulations and differential equations.

Mesh:

Year:  2012        PMID: 23368390     DOI: 10.1103/PhysRevLett.109.248107

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks.

Authors:  Margaret J Tse; Brian K Chu; Mahua Roy; Elizabeth L Read
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Modeling stochastic noise in gene regulatory systems.

Authors:  Arwen Meister; Chao Du; Ye Henry Li; Wing Hung Wong
Journal:  Quant Biol       Date:  2014-03

3.  An Analytical Framework for Studying Small-Number Effects in Catalytic Reaction Networks: A Probability Generating Function Approach to Chemical Master Equations.

Authors:  Masaki Nakagawa; Yuichi Togashi
Journal:  Front Physiol       Date:  2016-03-24       Impact factor: 4.566

4.  High-resolution mapping of bifurcations in nonlinear biochemical circuits.

Authors:  A J Genot; A Baccouche; R Sieskind; N Aubert-Kato; N Bredeche; J F Bartolo; V Taly; T Fujii; Y Rondelez
Journal:  Nat Chem       Date:  2016-06-20       Impact factor: 24.427

5.  Multi-stability in cellular differentiation enabled by a network of three mutually repressing master regulators.

Authors:  Atchuta Srinivas Duddu; Sarthak Sahoo; Souvadra Hati; Siddharth Jhunjhunwala; Mohit Kumar Jolly
Journal:  J R Soc Interface       Date:  2020-09-30       Impact factor: 4.118

6.  A computational method for the investigation of multistable systems and its application to genetic switches.

Authors:  Miriam Leon; Mae L Woods; Alex J H Fedorec; Chris P Barnes
Journal:  BMC Syst Biol       Date:  2016-12-07

7.  Markov State Models of gene regulatory networks.

Authors:  Brian K Chu; Margaret J Tse; Royce R Sato; Elizabeth L Read
Journal:  BMC Syst Biol       Date:  2017-02-06

8.  Hybrid T-helper cells: stabilizing the moderate center in a polarized system.

Authors:  Sui Huang
Journal:  PLoS Biol       Date:  2013-08-20       Impact factor: 8.029

9.  Enzyme sequestration by the substrate: An analysis in the deterministic and stochastic domains.

Authors:  Andreas Petrides; Glenn Vinnicombe
Journal:  PLoS Comput Biol       Date:  2018-05-17       Impact factor: 4.475

10.  Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch.

Authors:  Xiaona Fang; Qiong Liu; Christopher Bohrer; Zach Hensel; Wei Han; Jin Wang; Jie Xiao
Journal:  Nat Commun       Date:  2018-07-17       Impact factor: 14.919

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