Literature DB >> 23362311

Context-specific microRNA function in developmental complexity.

Adam P Carroll1, Paul A Tooney, Murray J Cairns.   

Abstract

Since their discovery, microRNAs (miRNA) have been implicated in a vast array of biological processes in animals, from fundamental developmental functions including cellular proliferation and differentiation, to more complex and specialized roles such as long-term potentiation and synapse-specific modifications in neurons. This review recounts the history behind this paradigm shift, which has seen small non-coding RNA molecules coming to the forefront of molecular biology, and introduces their role in establishing developmental complexity in animals. The fundamental mechanisms of miRNA biogenesis and function are then considered, leading into a discussion of recent discoveries transforming our understanding of how these molecules regulate gene network behaviour throughout developmental and pathophysiological processes. The emerging complexity of this mechanism is also examined with respect to the influence of cellular context on miRNA function. This discussion highlights the absolute imperative for experimental designs to appreciate the significance of context-specific factors when determining what genes are regulated by a particular miRNA. Moreover, by establishing the timing, location, and mechanism of these regulatory events, we may ultimately understand the true biological function of a specific miRNA in a given cellular environment.

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Year:  2013        PMID: 23362311     DOI: 10.1093/jmcb/mjt004

Source DB:  PubMed          Journal:  J Mol Cell Biol        ISSN: 1759-4685            Impact factor:   6.216


  18 in total

Review 1.  microRNA management of NK-cell developmental and functional programs.

Authors:  Jeffrey W Leong; Ryan P Sullivan; Todd A Fehniger
Journal:  Eur J Immunol       Date:  2014-09-16       Impact factor: 5.532

2.  Vitamin D receptor agonists regulate ocular developmental angiogenesis and modulate expression of dre-miR-21 and VEGF.

Authors:  Stephanie L Merrigan; Breandán N Kennedy
Journal:  Br J Pharmacol       Date:  2017-07-07       Impact factor: 8.739

3.  A hidden threshold in motor neuron gene networks revealed by modulation of miR-218 dose.

Authors:  Neal D Amin; Gokhan Senturk; Giancarlo Costaguta; Shawn Driscoll; Brendan O'Leary; Dario Bonanomi; Samuel L Pfaff
Journal:  Neuron       Date:  2021-08-26       Impact factor: 18.688

4.  Widespread context dependency of microRNA-mediated regulation.

Authors:  Florian Erhard; Jürgen Haas; Diana Lieber; Georg Malterer; Lukasz Jaskiewicz; Mihaela Zavolan; Lars Dölken; Ralf Zimmer
Journal:  Genome Res       Date:  2014-03-25       Impact factor: 9.043

5.  Alteration of imprinted Dlk1-Dio3 miRNA cluster expression in the entorhinal cortex induced by maternal immune activation and adolescent cannabinoid exposure.

Authors:  S L Hollins; K Zavitsanou; F R Walker; M J Cairns
Journal:  Transl Psychiatry       Date:  2014-09-30       Impact factor: 6.222

6.  Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.

Authors:  Hua-Sheng Chiu; David Llobet-Navas; Xuerui Yang; Wei-Jen Chung; Alberto Ambesi-Impiombato; Archana Iyer; Hyunjae Ryan Kim; Elena G Seviour; Zijun Luo; Vasudha Sehgal; Tyler Moss; Yiling Lu; Prahlad Ram; José Silva; Gordon B Mills; Andrea Califano; Pavel Sumazin
Journal:  Genome Res       Date:  2014-11-05       Impact factor: 9.043

7.  The long non-coding RNA PCAT-1 promotes prostate cancer cell proliferation through cMyc.

Authors:  John R Prensner; Wei Chen; Sumin Han; Matthew K Iyer; Qi Cao; Vishal Kothari; Joseph R Evans; Karen E Knudsen; Michelle T Paulsen; Mats Ljungman; Theodore S Lawrence; Arul M Chinnaiyan; Felix Y Feng
Journal:  Neoplasia       Date:  2014-11-20       Impact factor: 5.715

8.  Differentially expressed microRNAs in chondrocytes from distinct regions of developing human cartilage.

Authors:  Audrey McAlinden; Nobish Varghese; Louisa Wirthlin; Li-Wei Chang
Journal:  PLoS One       Date:  2013-09-09       Impact factor: 3.240

Review 9.  Regulation of gene expression by microRNA in HCV infection and HCV-mediated hepatocellular carcinoma.

Authors:  Priyanka Gupta; Murray J Cairns; Nitin K Saksena
Journal:  Virol J       Date:  2014-04-01       Impact factor: 4.099

10.  Ontogeny of small RNA in the regulation of mammalian brain development.

Authors:  Sharon L Hollins; Belinda J Goldie; Adam P Carroll; Elizabeth A Mason; Frederick R Walker; Darryl W Eyles; Murray J Cairns
Journal:  BMC Genomics       Date:  2014-09-09       Impact factor: 3.969

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