Literature DB >> 23359256

Non-parametric and integrated framework for segmenting and counting neuroblastic cells within neuroblastoma tumor images.

Siamak Tafavogh1, Karla Felix Navarro, Daniel R Catchpoole, Paul J Kennedy.   

Abstract

Neuroblastoma is a malignant tumor and a cancer in childhood that derives from the neural crest. The number of neuroblastic cells within the tumor provides significant prognostic information for pathologists. An enormous number of neuroblastic cells makes the process of counting tedious and error-prone. We propose a user interaction-independent framework that segments cellular regions, splits the overlapping cells and counts the total number of single neuroblastic cells. Our novel segmentation algorithm regards an image as a feature space constructed by joint spatial-intensity features of color pixels. It clusters the pixels within the feature space using mean-shift and then partitions the image into multiple tiles. We propose a novel color analysis approach to select the tiles with similar intensity to the cellular regions. The selected tiles contain a mixture of single and overlapping cells. We therefore also propose a cell counting method to analyse morphology of the cells and discriminate between overlapping and single cells. Ultimately, we apply watershed to split overlapping cells. The results have been evaluated by a pathologist. Our segmentation algorithm was compared against adaptive thresholding. Our cell counting algorithm was compared with two state of the art algorithms. The overall cell counting accuracy of the system is 87.65 %.

Entities:  

Mesh:

Year:  2013        PMID: 23359256     DOI: 10.1007/s11517-013-1034-9

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  16 in total

Review 1.  Is H&E morphology coming to an end?

Authors:  H Fox
Journal:  J Clin Pathol       Date:  2000-01       Impact factor: 3.411

2.  Automated segmentation of comet assay images using Gaussian filtering and fuzzy clustering.

Authors:  Mario Sansone; Olga Zeni; Giovanni Esposito
Journal:  Med Biol Eng Comput       Date:  2012-03-09       Impact factor: 2.602

3.  Cooperation of color pixel classification schemes and color watershed: a study for microscopic images.

Authors:  Olivier Lezoray; Hubert Cardot
Journal:  IEEE Trans Image Process       Date:  2002       Impact factor: 10.856

4.  Image analysis using mathematical morphology.

Authors:  R M Haralick; S R Sternberg; X Zhuang
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  1987-04       Impact factor: 6.226

5.  Improved automatic detection and segmentation of cell nuclei in histopathology images.

Authors:  Yousef Al-Kofahi; Wiem Lassoued; William Lee; Badrinath Roysam
Journal:  IEEE Trans Biomed Eng       Date:  2009-10-30       Impact factor: 4.538

6.  Applying watershed algorithms to the segmentation of clustered nuclei.

Authors:  N Malpica; C O de Solórzano; J J Vaquero; A Santos; I Vallcorba; J M García-Sagredo; F del Pozo
Journal:  Cytometry       Date:  1997-08-01

7.  NUCLEAR SEGMENTATION IN MICROSCOPE CELL IMAGES: A HAND-SEGMENTED DATASET AND COMPARISON OF ALGORITHMS.

Authors:  Luís Pedro Coelho; Aabid Shariff; Robert F Murphy
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009

8.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

9.  Terminology and morphologic criteria of neuroblastic tumors: recommendations by the International Neuroblastoma Pathology Committee.

Authors:  H Shimada; I M Ambros; L P Dehner; J Hata; V V Joshi; B Roald
Journal:  Cancer       Date:  1999-07-15       Impact factor: 6.860

10.  The problems and promise of central pathology review: development of a standardized procedure for the Children's Oncology Group.

Authors:  Lisa A Teot; Richard Sposto; Anita Khayat; Stephen Qualman; Gregory Reaman; David Parham
Journal:  Pediatr Dev Pathol       Date:  2007 May-Jun
View more
  3 in total

1.  Efficient detection of wound-bed and peripheral skin with statistical colour models.

Authors:  Francisco J Veredas; Héctor Mesa; Laura Morente
Journal:  Med Biol Eng Comput       Date:  2015-01-07       Impact factor: 2.602

2.  Can Archival Tissue Reveal Answers to Modern Research Questions?: Computer-Aided Histological Assessment of Neuroblastoma Tumours Collected over 60 Years.

Authors:  Albert Chetcuti; Nicole Mackie; Siamak Tafavogh; Nicole Graf; Tony Henwood; Amanda Charlton; Daniel Catchpoole
Journal:  Microarrays (Basel)       Date:  2014-02-28

3.  Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells.

Authors:  Siamak Tafavogh; Daniel R Catchpoole; Paul J Kennedy
Journal:  BMC Bioinformatics       Date:  2014-08-11       Impact factor: 3.169

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.