Literature DB >> 23357412

Glycolytic oscillations in a model of a lactic acid bacterium metabolism.

Jennifer Levering1, Ursula Kummer, Konrad Becker, Sven Sahle.   

Abstract

Glycolytic oscillations in yeast have been extensively studied. It is still unclear, if these oscillations are caused by the allosteric enzyme phosphofructokinase or the stoichiometry of glycolysis which contains an autocatalysis with respect to ATP. Bacterial glycolysis shows a different stoichiometry, however, also containing a stoichiometric autocatalysis. For Escherichia coli, the regulation of the enzyme phosphofructokinase is also assumed to be a major reason for oscillations to occur. We investigated glycolytic oscillations in a quantitative kinetic model for Streptococcus pyogenes set-up on the basis of experimental data. We found oscillations within physiologically feasible parameter ranges. We investigated the origin of these oscillations and conclude that, again, both the stoichiometry of the system, as well as its allosterically regulated enzymes can give rise to these oscillations. For the analysis we employed established and new optimization methods for finding oscillatory regimes and present these in the context of this study.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 23357412     DOI: 10.1016/j.bpc.2012.11.002

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  6 in total

1.  Analysis of Raw Biofluids by Mass Spectrometry Using Microfluidic Diffusion-Based Separation.

Authors:  Joshua Heinemann; Brigit Noon; Daniel Willems; Katherine Budeski; Brian Bothner
Journal:  Anal Methods       Date:  2016-12-06       Impact factor: 2.896

Review 2.  Synchronisation of glycolytic activity in yeast cells.

Authors:  Marcus J B Hauser
Journal:  Curr Genet       Date:  2021-10-11       Impact factor: 3.886

3.  Real-time digitization of metabolomics patterns from a living system using mass spectrometry.

Authors:  Joshua Heinemann; Brigit Noon; Mohammad J Mohigmi; Aurélien Mazurie; David L Dickensheets; Brian Bothner
Journal:  J Am Soc Mass Spectrom       Date:  2014-07-08       Impact factor: 3.109

4.  Optimizing metabolite production using periodic oscillations.

Authors:  Steven W Sowa; Michael Baldea; Lydia M Contreras
Journal:  PLoS Comput Biol       Date:  2014-06-05       Impact factor: 4.475

5.  A model reduction method for biochemical reaction networks.

Authors:  Shodhan Rao; Arjan van der Schaft; Karen van Eunen; Barbara M Bakker; Bayu Jayawardhana
Journal:  BMC Syst Biol       Date:  2014-05-03

6.  Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs.

Authors:  Thierry D G A Mondeel; Oleksandr Ivanov; Hans V Westerhoff; Wolfram Liebermeister; Matteo Barberis
Journal:  NPJ Syst Biol Appl       Date:  2020-04-03
  6 in total

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