Literature DB >> 23356942

Effect of high exogenous electric pulses on protein conformation: myoglobin as a case study.

Paolo Marracino1, Francesca Apollonio, Micaela Liberti, Guglielmo d'Inzeo, Andrea Amadei.   

Abstract

Protein folding and unfolding under the effect of exogenous perturbations remains a topic of great interest, further enhanced by recent technological developments in the field of signal generation that allow the use of intense ultrashort electric pulses to directly interact at microscopic level with biological matter. In this paper, we show results from molecular dynamics (MD) simulations of a single myoglobin molecule in water exposed to pulsed and static electric fields, ranging from 10(8) to 10(9) V/m, compared to data with unexposed conditions. We have found that the highest intensity (10(9) V/m) produced a fast transition (occurring within a few hundreds of picoseconds) between folded and unfolded states, as inferred by secondary structures and geometrical analysis. Fields of 10(8) V/m, on the contrary, produced no significant denaturation, although a relevant effect on the protein dipolar behavior was detected.

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Year:  2013        PMID: 23356942     DOI: 10.1021/jp309857b

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  13 in total

1.  Microdosimetric study for nanosecond pulsed electric fields on a cell circuit model with nucleus.

Authors:  Agnese Denzi; Caterina Merla; Paola Camilleri; Alessandra Paffi; Guglielmo d'Inzeo; Francesca Apollonio; Micaela Liberti
Journal:  J Membr Biol       Date:  2013-04-18       Impact factor: 1.843

2.  Geometrical Characterization of an Electropore from Water Positional Fluctuations.

Authors:  P Marracino; F Castellani; P T Vernier; M Liberti; F Apollonio
Journal:  J Membr Biol       Date:  2016-07-19       Impact factor: 1.843

3.  Nanosecond pulsed electric field (nsPEF) and vaccines: a novel technique for the inactivation of SARS-CoV-2 and other viruses?

Authors:  A R Ruiz-Fernández; M Rosemblatt; T Perez-Acle
Journal:  Ann Med       Date:  2022-12       Impact factor: 5.348

4.  Unfolding simulations of holomyoglobin from four mammals: identification of intermediates and β-sheet formation from partially unfolded states.

Authors:  Pouria Dasmeh; Kasper P Kepp
Journal:  PLoS One       Date:  2013-12-27       Impact factor: 3.240

5.  Inactivation of Ricin Toxin by Nanosecond Pulsed Electric Fields Including Evidences from Cell and Animal Toxicity.

Authors:  Kai Wei; Wei Li; Shan Gao; Bin Ji; Yating Zang; Bo Su; Kaile Wang; Maosheng Yao; Jue Zhang; Jinglin Wang
Journal:  Sci Rep       Date:  2016-01-05       Impact factor: 4.379

6.  Hub Proteins Involved in RAW 264.7 Macrophages Exposed to Direct Current Electric Field.

Authors:  Huijuan Li; Shibin Liu; Yongqian Du; Jie Tan; Jiezhang Luo; Yulong Sun
Journal:  Int J Mol Sci       Date:  2020-06-24       Impact factor: 5.923

7.  Tubulin response to intense nanosecond-scale electric field in molecular dynamics simulation.

Authors:  Paolo Marracino; Daniel Havelka; Jiří Průša; Micaela Liberti; Jack Tuszynski; Ahmed T Ayoub; Francesca Apollonio; Michal Cifra
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

8.  Nanosecond pulsed electric signals can affect electrostatic environment of proteins below the threshold of conformational effects: The case study of SOD1 with a molecular simulation study.

Authors:  Elena Della Valle; Paolo Marracino; Olga Pakhomova; Micaela Liberti; Francesca Apollonio
Journal:  PLoS One       Date:  2019-08-27       Impact factor: 3.240

9.  Molecular dynamics simulation of the nanosecond pulsed electric field effect on kinesin nanomotor.

Authors:  Jiří Průša; Michal Cifra
Journal:  Sci Rep       Date:  2019-12-23       Impact factor: 4.379

10.  Human Aquaporin 4 Gating Dynamics under Perpendicularly-Oriented Electric-Field Impulses: A Molecular Dynamics Study.

Authors:  Paolo Marracino; Micaela Liberti; Erika Trapani; Christian J Burnham; Massimiliano Avena; José-Antonio Garate; Francesca Apollonio; Niall J English
Journal:  Int J Mol Sci       Date:  2016-07-14       Impact factor: 5.923

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