| Literature DB >> 23355800 |
Stefano Farioli-Vecchioli1, Laura Micheli, Luca Leonardi, Manuela Ceccarelli, Sebastiano Cavallaro, Felice Tirone.
Abstract
Entities:
Year: 2013 PMID: 23355800 PMCID: PMC3553397 DOI: 10.3389/fnins.2012.00198
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
Figure A1(A) Math1 and Id3 mRNA expression values by real time PCR analysis performed in GCPs from 7-days-old mice of the four genotypes indicated. Math1 mRNA levels are reduced in GCPs of Tis21 knockout mice, either in a Patched1 wild-type background (Tis21 vs. Tis21) or in a Patched1 heterozygous background (Ptch1+/−/Tis21 vs. Ptch1+/−/Tis21). Mean ± SEM fold increases are from three independent experiments. TBP was used to normalize data. *P < 0.05, or **P < 0.01, Student's t-test. (B) Enrichment analysis to identify epigenetically-regulated genes among the Tis21-regulated genes. Among the 344 Tis21-regulated genes, either Tis21-knockout-specific (pairwise comparison of Tis21 vs. Tis21) or medulloblastoma-specific (pairwise comparison of Ptch1+/−/Tis21 vs. Ptch1+/−/Tis21; see Farioli-Vecchioli et al., 2012a) genes were selected whose product interacts with histone modifying factors [i.e., arginine N-methyltransferase 1 (Prmt1), or histone deacetylases] or whose expression is significantly affected by inhibitors of DNA methylases or histone deacetylases. Enrichment P values were obtained with Fisher's exact test.
Figure 1Proposed models of plasticity and transformation of cerebellar granule precursor cells (GCPs) in response to Math1, Tis21, Nos2, Cxcl3, or Gap43. (A) Hypothetical model for the ambivalent role of Math1 (Atoh1) in tumorigenesis and differentiation; in a proliferative (Shh) environment Math1 favors tumorigenesis, while when GCPs are exposed to a differentiative signal (Tis21), Math1 may have a prodifferentiative action. Math1 and Id3 were not selected among the 344 genes whose expression is modified by Tis21-knockout in the report by Farioli-Vecchioli et al. (2012a), because of the stringent cut-off imposed on the statistical analysis. See Figure A1 for analysis of Math 1 and Id3 mRNA levels in GCPs of Tis21-null mice. (B) Epigenetically-regulated genes among the 344 Tis21-regulated genes, either Tis21-knockout-specific (pairwise comparison of Tis21 vs. Tis21) or medulloblastoma-specific (pairwise comparison of Ptch1+/−/Tis21 vs. Ptch1+/−/Tis21); see (Farioli-Vecchioli et al., 2012a) and Figure A1 for enrichment analysis. (C) Model of plasticity and transformation of GCPs, involving Cxcl3- and Gap43-induced migration (see text). EGL, external granular layer (surface of cerebellum); ML, molecular layer; IGL, internal granular layer.