Literature DB >> 23354009

A straightforward method for stereospecific assignment of val and leu prochiral methyl groups by solid-state NMR: Scrambling in the [2-13C]Glucose labeling scheme.

Guohua Lv1, Hannes Klaus Faßhuber, Antoine Loquet, Jean-Philippe Demers, Vinesh Vijayan, Karin Giller, Stefan Becker, Adam Lange.   

Abstract

The unambiguous stereospecific assignment of the prochiral methyl groups in Val and Leu plays an important role in the structural investigation of proteins by NMR. Here, we present a straightforward method for their stereospecific solid-state NMR assignment based on [2-(13)C]Glucose ([2-(13)C]Glc) as the sole carbon source during protein expression. The approach is fundamentally based on the stereo-selective biosynthetic pathway of Val and Leu, and the co-presence of [2-(13)C]pyruvate produced mainly by glycolysis and [3-(13)C]/[1,3-(13)C]pyruvate most probably formed through scrambling in the pentose phosphate pathway. As a consequence, the isotope spin pairs (13)Cβ-(13)Cγ2 and (13)Cα-(13)Cγ1 in Val, and (13)Cγ-(13)Cδ2 and (13)Cβ-(13)Cδ1 in Leu are obtained. The approach is successfully demonstrated with the stereospecific assignment of the methyl groups of Val and Leu of type 3 secretion system PrgI needles and microcrystalline ubiquitin.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23354009     DOI: 10.1016/j.jmr.2012.12.017

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  2 in total

1.  Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR.

Authors:  Hannes Klaus Fasshuber; Nils-Alexander Lakomek; Birgit Habenstein; Antoine Loquet; Chaowei Shi; Karin Giller; Sebastian Wolff; Stefan Becker; Adam Lange
Journal:  Protein Sci       Date:  2015-03-16       Impact factor: 6.725

2.  High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy.

Authors:  Jean-Philippe Demers; Birgit Habenstein; Antoine Loquet; Suresh Kumar Vasa; Karin Giller; Stefan Becker; David Baker; Adam Lange; Nikolaos G Sgourakis
Journal:  Nat Commun       Date:  2014-09-29       Impact factor: 14.919

  2 in total

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