Literature DB >> 23353025

A novel analytical method for evolutionary graph theory problems.

Paulo Shakarian1, Patrick Roos, Geoffrey Moores.   

Abstract

Evolutionary graph theory studies the evolutionary dynamics of populations structured on graphs. A central problem is determining the probability that a small number of mutants overtake a population. Currently, Monte Carlo simulations are used for estimating such fixation probabilities on general directed graphs, since no good analytical methods exist. In this paper, we introduce a novel deterministic framework for computing fixation probabilities for strongly connected, directed, weighted evolutionary graphs under neutral drift. We show how this framework can also be used to calculate the expected number of mutants at a given time step (even if we relax the assumption that the graph is strongly connected), how it can extend to other related models (e.g. voter model), how our framework can provide non-trivial bounds for fixation probability in the case of an advantageous mutant, and how it can be used to find a non-trivial lower bound on the mean time to fixation. We provide various experimental results determining fixation probabilities and expected number of mutants on different graphs. Among these, we show that our method consistently outperforms Monte Carlo simulations in speed by several orders of magnitude. Finally we show how our approach can provide insight into synaptic competition in neurology. Published by Elsevier Ireland Ltd.

Mesh:

Year:  2013        PMID: 23353025     DOI: 10.1016/j.biosystems.2013.01.006

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  5 in total

1.  Evolutionary regime transitions in structured populations.

Authors:  Fernando Alcalde Cuesta; Pablo González Sequeiros; Álvaro Lozano Rojo
Journal:  PLoS One       Date:  2018-11-26       Impact factor: 3.240

2.  Martingales and the fixation time of evolutionary graphs with arbitrary dimensionality.

Authors:  Travis Monk; André van Schaik
Journal:  R Soc Open Sci       Date:  2022-05-11       Impact factor: 3.653

3.  The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure.

Authors:  Benjamin Allen; Christine Sample; Yulia Dementieva; Ruben C Medeiros; Christopher Paoletti; Martin A Nowak
Journal:  PLoS Comput Biol       Date:  2015-02-26       Impact factor: 4.475

4.  Suppressors of selection.

Authors:  Fernando Alcalde Cuesta; Pablo González Sequeiros; Álvaro Lozano Rojo
Journal:  PLoS One       Date:  2017-07-10       Impact factor: 3.240

Review 5.  The role of evolutionary game theory in spatial and non-spatial models of the survival of cooperation in cancer: a review.

Authors:  Helena Coggan; Karen M Page
Journal:  J R Soc Interface       Date:  2022-08-17       Impact factor: 4.293

  5 in total

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