Literature DB >> 23352163

Using whole-exome sequencing to identify inherited causes of autism.

Timothy W Yu1, Maria H Chahrour, Michael E Coulter, Sarn Jiralerspong, Kazuko Okamura-Ikeda, Bulent Ataman, Klaus Schmitz-Abe, David A Harmin, Mazhar Adli, Athar N Malik, Alissa M D'Gama, Elaine T Lim, Stephan J Sanders, Ganesh H Mochida, Jennifer N Partlow, Christine M Sunu, Jillian M Felie, Jacqueline Rodriguez, Ramzi H Nasir, Janice Ware, Robert M Joseph, R Sean Hill, Benjamin Y Kwan, Muna Al-Saffar, Nahit M Mukaddes, Asif Hashmi, Soher Balkhy, Generoso G Gascon, Fuki M Hisama, Elaine LeClair, Annapurna Poduri, Ozgur Oner, Samira Al-Saad, Sadika A Al-Awadi, Laila Bastaki, Tawfeg Ben-Omran, Ahmad S Teebi, Lihadh Al-Gazali, Valsamma Eapen, Christine R Stevens, Leonard Rappaport, Stacey B Gabriel, Kyriacos Markianos, Matthew W State, Michael E Greenberg, Hisaaki Taniguchi, Nancy E Braverman, Eric M Morrow, Christopher A Walsh.   

Abstract

Despite significant heritability of autism spectrum disorders (ASDs), their extreme genetic heterogeneity has proven challenging for gene discovery. Studies of primarily simplex families have implicated de novo copy number changes and point mutations, but are not optimally designed to identify inherited risk alleles. We apply whole-exome sequencing (WES) to ASD families enriched for inherited causes due to consanguinity and find familial ASD associated with biallelic mutations in disease genes (AMT, PEX7, SYNE1, VPS13B, PAH, and POMGNT1). At least some of these genes show biallelic mutations in nonconsanguineous families as well. These mutations are often only partially disabling or present atypically, with patients lacking diagnostic features of the Mendelian disorders with which these genes are classically associated. Our study shows the utility of WES for identifying specific genetic conditions not clinically suspected and the importance of partial loss of gene function in ASDs.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23352163      PMCID: PMC3694430          DOI: 10.1016/j.neuron.2012.11.002

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  74 in total

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Review 2.  Clinical variability of genetic isolates of Cohen syndrome.

Authors:  S Douzgou; M B Petersen
Journal:  Clin Genet       Date:  2011-04-07       Impact factor: 4.438

3.  Recovery of PEX1-Gly843Asp peroxisome dysfunction by small-molecule compounds.

Authors:  Rui Zhang; Li Chen; Sarn Jiralerspong; Ann Snowden; Steven Steinberg; Nancy Braverman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-08       Impact factor: 11.205

Review 4.  Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting.

Authors:  Catalina Betancur
Journal:  Brain Res       Date:  2010-12-01       Impact factor: 3.252

5.  Rhizomelic chondrodysplasia punctata is a peroxisomal protein targeting disease caused by a non-functional PTS2 receptor.

Authors:  A M Motley; E H Hettema; E M Hogenhout; P Brites; A L ten Asbroek; F A Wijburg; F Baas; H S Heijmans; H F Tabak; R J Wanders; B Distel
Journal:  Nat Genet       Date:  1997-04       Impact factor: 38.330

6.  Identifying autism loci and genes by tracing recent shared ancestry.

Authors:  Eric M Morrow; Seung-Yun Yoo; Steven W Flavell; Tae-Kyung Kim; Yingxi Lin; Robert Sean Hill; Nahit M Mukaddes; Soher Balkhy; Generoso Gascon; Asif Hashmi; Samira Al-Saad; Janice Ware; Robert M Joseph; Rachel Greenblatt; Danielle Gleason; Julia A Ertelt; Kira A Apse; Adria Bodell; Jennifer N Partlow; Brenda Barry; Hui Yao; Kyriacos Markianos; Russell J Ferland; Michael E Greenberg; Christopher A Walsh
Journal:  Science       Date:  2008-07-11       Impact factor: 47.728

7.  Characterization of the signal peptide at the amino terminus of the rat peroxisomal 3-ketoacyl-CoA thiolase precursor.

Authors:  T Tsukamoto; S Hata; S Yokota; S Miura; Y Fujiki; M Hijikata; S Miyazawa; T Hashimoto; T Osumi
Journal:  J Biol Chem       Date:  1994-02-25       Impact factor: 5.157

8.  Peroxisomal alterations in Alzheimer's disease.

Authors:  Jianqiu Kou; Gabor G Kovacs; Romana Höftberger; Willem Kulik; Alexander Brodde; Sonja Forss-Petter; Selma Hönigschnabl; Andreas Gleiss; Britta Brügger; Ronald Wanders; Wilhelm Just; Herbert Budka; Susanne Jungwirth; Peter Fischer; Johannes Berger
Journal:  Acta Neuropathol       Date:  2011-05-19       Impact factor: 17.088

9.  Microduplications of 16p11.2 are associated with schizophrenia.

Authors:  Shane E McCarthy; Vladimir Makarov; George Kirov; Anjene M Addington; Jon McClellan; Seungtai Yoon; Diana O Perkins; Diane E Dickel; Mary Kusenda; Olga Krastoshevsky; Verena Krause; Ravinesh A Kumar; Detelina Grozeva; Dheeraj Malhotra; Tom Walsh; Elaine H Zackai; Paige Kaplan; Jaya Ganesh; Ian D Krantz; Nancy B Spinner; Patricia Roccanova; Abhishek Bhandari; Kevin Pavon; B Lakshmi; Anthony Leotta; Jude Kendall; Yoon-Ha Lee; Vladimir Vacic; Sydney Gary; Lilia M Iakoucheva; Timothy J Crow; Susan L Christian; Jeffrey A Lieberman; T Scott Stroup; Terho Lehtimäki; Kaija Puura; Chad Haldeman-Englert; Justin Pearl; Meredith Goodell; Virginia L Willour; Pamela Derosse; Jo Steele; Layla Kassem; Jessica Wolff; Nisha Chitkara; Francis J McMahon; Anil K Malhotra; James B Potash; Thomas G Schulze; Markus M Nöthen; Sven Cichon; Marcella Rietschel; Ellen Leibenluft; Vlad Kustanovich; Clara M Lajonchere; James S Sutcliffe; David Skuse; Michael Gill; Louise Gallagher; Nancy R Mendell; Nick Craddock; Michael J Owen; Michael C O'Donovan; Tamim H Shaikh; Ezra Susser; Lynn E Delisi; Patrick F Sullivan; Curtis K Deutsch; Judith Rapoport; Deborah L Levy; Mary-Claire King; Jonathan Sebat
Journal:  Nat Genet       Date:  2009-10-25       Impact factor: 38.330

10.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

Authors:  Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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  181 in total

Review 1.  Genes, circuits, and precision therapies for autism and related neurodevelopmental disorders.

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Journal:  Science       Date:  2015-10-15       Impact factor: 47.728

2.  Loss-of-function variants in schizophrenia risk and SETD1A as a candidate susceptibility gene.

Authors:  Atsushi Takata; Bin Xu; Iuliana Ionita-Laza; J Louw Roos; Joseph A Gogos; Maria Karayiorgou
Journal:  Neuron       Date:  2014-05-21       Impact factor: 17.173

3.  Systematic reconstruction of autism biology from massive genetic mutation profiles.

Authors:  Weijun Luo; Chaolin Zhang; Yong-Hui Jiang; Cory R Brouwer
Journal:  Sci Adv       Date:  2018-04-11       Impact factor: 14.136

4.  InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.

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Journal:  Nucleic Acids Res       Date:  2016-04-21       Impact factor: 16.971

5.  Genes with de novo mutations are shared by four neuropsychiatric disorders discovered from NPdenovo database.

Authors:  Jinchen Li; Tao Cai; Yi Jiang; Huiqian Chen; Xin He; Chao Chen; Xianfeng Li; Qianzhi Shao; Xia Ran; Zhongshan Li; Kun Xia; Chunyu Liu; Zhong Sheng Sun; Jinyu Wu
Journal:  Mol Psychiatry       Date:  2015-04-07       Impact factor: 15.992

6.  Characterizing runs of homozygosity and their impact on risk for psychosis in a population isolate.

Authors:  Nadine M Melhem; Cong Lu; Cara Dresbold; Frank A Middleton; Lambertus Klei; Shawn Wood; Stephen V Faraone; Sophia Vinogradov; Josepha Tiobech; Victor Yano; Kathryn Roeder; William Byerley; Marina Myles-Worsley; Bernie Devlin
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2014-07-01       Impact factor: 3.568

Review 7.  DNA Methylation and Susceptibility to Autism Spectrum Disorder.

Authors:  Martine W Tremblay; Yong-Hui Jiang
Journal:  Annu Rev Med       Date:  2019-01-27       Impact factor: 13.739

8.  Overexpression of NEUROG2 and NEUROG1 in human embryonic stem cells produces a network of excitatory and inhibitory neurons.

Authors:  Congyi Lu; Xi Shi; Andrew Allen; David Baez-Nieto; Alexandria Nikish; Neville E Sanjana; Jen Q Pan
Journal:  FASEB J       Date:  2019-01-30       Impact factor: 5.191

9.  Comorbidity clusters in autism spectrum disorders: an electronic health record time-series analysis.

Authors:  Finale Doshi-Velez; Yaorong Ge; Isaac Kohane
Journal:  Pediatrics       Date:  2013-12-09       Impact factor: 7.124

10.  Identification of Genetic Loci Shared Between Attention-Deficit/Hyperactivity Disorder, Intelligence, and Educational Attainment.

Authors:  Kevin S O'Connell; Alexey Shadrin; Olav B Smeland; Shahram Bahrami; Oleksandr Frei; Francesco Bettella; Florian Krull; Chun C Fan; Ragna B Askeland; Gun Peggy S Knudsen; Anne Halmøy; Nils Eiel Steen; Torill Ueland; G Bragi Walters; Katrín Davíðsdóttir; Gyða S Haraldsdóttir; Ólafur Ó Guðmundsson; Hreinn Stefánsson; Ted Reichborn-Kjennerud; Jan Haavik; Anders M Dale; Kári Stefánsson; Srdjan Djurovic; Ole A Andreassen
Journal:  Biol Psychiatry       Date:  2019-11-29       Impact factor: 13.382

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