Literature DB >> 23352155

Rare inherited variation in autism: beginning to see the forest and a few trees.

Jason L Stein1, Neelroop N Parikshak, Daniel H Geschwind.   

Abstract

In this issue of Neuron, two papers (Lim et al., 2013; Yu et al., 2013) use whole-exome sequencing (WES) to elucidate the contribution of inherited variation to the risk for autism by leveraging the increased penetrance of homozygous and compound heterozygous rare variants in autosomes and hemizygous rare variants in the X chromosome of males. Together, they expand our knowledge about the genetic architecture of ASD, verify previously identified genes, and identify novel mutations that will guide the discovery of the critical biological processes disrupted in autism.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Year:  2013        PMID: 23352155      PMCID: PMC3691080          DOI: 10.1016/j.neuron.2013.01.010

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  13 in total

1.  Genome-wide transcriptome profiling reveals the functional impact of rare de novo and recurrent CNVs in autism spectrum disorders.

Authors:  Rui Luo; Stephan J Sanders; Yuan Tian; Irina Voineagu; Ni Huang; Su H Chu; Lambertus Klei; Chaochao Cai; Jing Ou; Jennifer K Lowe; Matthew E Hurles; Bernie Devlin; Matthew W State; Daniel H Geschwind
Journal:  Am J Hum Genet       Date:  2012-06-21       Impact factor: 11.025

2.  Genetic heritability and shared environmental factors among twin pairs with autism.

Authors:  Joachim Hallmayer; Sue Cleveland; Andrea Torres; Jennifer Phillips; Brianne Cohen; Tiffany Torigoe; Janet Miller; Angie Fedele; Jack Collins; Karen Smith; Linda Lotspeich; Lisa A Croen; Sally Ozonoff; Clara Lajonchere; Judith K Grether; Neil Risch
Journal:  Arch Gen Psychiatry       Date:  2011-07-04

3.  Whole-genome sequencing in autism identifies hot spots for de novo germline mutation.

Authors:  Jacob J Michaelson; Yujian Shi; Madhusudan Gujral; Hancheng Zheng; Dheeraj Malhotra; Xin Jin; Minghan Jian; Guangming Liu; Douglas Greer; Abhishek Bhandari; Wenting Wu; Roser Corominas; Aine Peoples; Amnon Koren; Athurva Gore; Shuli Kang; Guan Ning Lin; Jasper Estabillo; Therese Gadomski; Balvindar Singh; Kun Zhang; Natacha Akshoomoff; Christina Corsello; Steven McCarroll; Lilia M Iakoucheva; Yingrui Li; Jun Wang; Jonathan Sebat
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

4.  De novo gene disruptions in children on the autistic spectrum.

Authors:  Ivan Iossifov; Michael Ronemus; Dan Levy; Zihua Wang; Inessa Hakker; Julie Rosenbaum; Boris Yamrom; Yoon-Ha Lee; Giuseppe Narzisi; Anthony Leotta; Jude Kendall; Ewa Grabowska; Beicong Ma; Steven Marks; Linda Rodgers; Asya Stepansky; Jennifer Troge; Peter Andrews; Mitchell Bekritsky; Kith Pradhan; Elena Ghiban; Melissa Kramer; Jennifer Parla; Ryan Demeter; Lucinda L Fulton; Robert S Fulton; Vincent J Magrini; Kenny Ye; Jennifer C Darnell; Robert B Darnell; Elaine R Mardis; Richard K Wilson; Michael C Schatz; W Richard McCombie; Michael Wigler
Journal:  Neuron       Date:  2012-04-26       Impact factor: 17.173

5.  De novo mutations revealed by whole-exome sequencing are strongly associated with autism.

Authors:  Stephan J Sanders; Michael T Murtha; Abha R Gupta; John D Murdoch; Melanie J Raubeson; A Jeremy Willsey; A Gulhan Ercan-Sencicek; Nicholas M DiLullo; Neelroop N Parikshak; Jason L Stein; Michael F Walker; Gordon T Ober; Nicole A Teran; Youeun Song; Paul El-Fishawy; Ryan C Murtha; Murim Choi; John D Overton; Robert D Bjornson; Nicholas J Carriero; Kyle A Meyer; Kaya Bilguvar; Shrikant M Mane; Nenad Sestan; Richard P Lifton; Murat Günel; Kathryn Roeder; Daniel H Geschwind; Bernie Devlin; Matthew W State
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

6.  Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy.

Authors:  Gaia Novarino; Paul El-Fishawy; Hulya Kayserili; Nagwa A Meguid; Eric M Scott; Jana Schroth; Jennifer L Silhavy; Majdi Kara; Rehab O Khalil; Tawfeg Ben-Omran; A Gulhan Ercan-Sencicek; Adel F Hashish; Stephan J Sanders; Abha R Gupta; Hebatalla S Hashem; Dietrich Matern; Stacey Gabriel; Larry Sweetman; Yasmeen Rahimi; Robert A Harris; Matthew W State; Joseph G Gleeson
Journal:  Science       Date:  2012-09-06       Impact factor: 47.728

7.  A systematic survey of loss-of-function variants in human protein-coding genes.

Authors:  Daniel G MacArthur; Suganthi Balasubramanian; Adam Frankish; Ni Huang; James Morris; Klaudia Walter; Luke Jostins; Lukas Habegger; Joseph K Pickrell; Stephen B Montgomery; Cornelis A Albers; Zhengdong D Zhang; Donald F Conrad; Gerton Lunter; Hancheng Zheng; Qasim Ayub; Mark A DePristo; Eric Banks; Min Hu; Robert E Handsaker; Jeffrey A Rosenfeld; Menachem Fromer; Mike Jin; Xinmeng Jasmine Mu; Ekta Khurana; Kai Ye; Mike Kay; Gary Ian Saunders; Marie-Marthe Suner; Toby Hunt; If H A Barnes; Clara Amid; Denise R Carvalho-Silva; Alexandra H Bignell; Catherine Snow; Bryndis Yngvadottir; Suzannah Bumpstead; David N Cooper; Yali Xue; Irene Gallego Romero; Jun Wang; Yingrui Li; Richard A Gibbs; Steven A McCarroll; Emmanouil T Dermitzakis; Jonathan K Pritchard; Jeffrey C Barrett; Jennifer Harrow; Matthew E Hurles; Mark B Gerstein; Chris Tyler-Smith
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

8.  Individual common variants exert weak effects on the risk for autism spectrum disorders.

Authors:  Richard Anney; Lambertus Klei; Dalila Pinto; Joana Almeida; Elena Bacchelli; Gillian Baird; Nadia Bolshakova; Sven Bölte; Patrick F Bolton; Thomas Bourgeron; Sean Brennan; Jessica Brian; Jillian Casey; Judith Conroy; Catarina Correia; Christina Corsello; Emily L Crawford; Maretha de Jonge; Richard Delorme; Eftichia Duketis; Frederico Duque; Annette Estes; Penny Farrar; Bridget A Fernandez; Susan E Folstein; Eric Fombonne; John Gilbert; Christopher Gillberg; Joseph T Glessner; Andrew Green; Jonathan Green; Stephen J Guter; Elizabeth A Heron; Richard Holt; Jennifer L Howe; Gillian Hughes; Vanessa Hus; Roberta Igliozzi; Suma Jacob; Graham P Kenny; Cecilia Kim; Alexander Kolevzon; Vlad Kustanovich; Clara M Lajonchere; Janine A Lamb; Miriam Law-Smith; Marion Leboyer; Ann Le Couteur; Bennett L Leventhal; Xiao-Qing Liu; Frances Lombard; Catherine Lord; Linda Lotspeich; Sabata C Lund; Tiago R Magalhaes; Carine Mantoulan; Christopher J McDougle; Nadine M Melhem; Alison Merikangas; Nancy J Minshew; Ghazala K Mirza; Jeff Munson; Carolyn Noakes; Gudrun Nygren; Katerina Papanikolaou; Alistair T Pagnamenta; Barbara Parrini; Tara Paton; Andrew Pickles; David J Posey; Fritz Poustka; Jiannis Ragoussis; Regina Regan; Wendy Roberts; Kathryn Roeder; Bernadette Roge; Michael L Rutter; Sabine Schlitt; Naisha Shah; Val C Sheffield; Latha Soorya; Inês Sousa; Vera Stoppioni; Nuala Sykes; Raffaella Tancredi; Ann P Thompson; Susanne Thomson; Ana Tryfon; John Tsiantis; Herman Van Engeland; John B Vincent; Fred Volkmar; J A S Vorstman; Simon Wallace; Kirsty Wing; Kerstin Wittemeyer; Shawn Wood; Danielle Zurawiecki; Lonnie Zwaigenbaum; Anthony J Bailey; Agatino Battaglia; Rita M Cantor; Hilary Coon; Michael L Cuccaro; Geraldine Dawson; Sean Ennis; Christine M Freitag; Daniel H Geschwind; Jonathan L Haines; Sabine M Klauck; William M McMahon; Elena Maestrini; Judith Miller; Anthony P Monaco; Stanley F Nelson; John I Nurnberger; Guiomar Oliveira; Jeremy R Parr; Margaret A Pericak-Vance; Joseph Piven; Gerard D Schellenberg; Stephen W Scherer; Astrid M Vicente; Thomas H Wassink; Ellen M Wijsman; Catalina Betancur; Joseph D Buxbaum; Edwin H Cook; Louise Gallagher; Michael Gill; Joachim Hallmayer; Andrew D Paterson; James S Sutcliffe; Peter Szatmari; Veronica J Vieland; Hakon Hakonarson; Bernie Devlin
Journal:  Hum Mol Genet       Date:  2012-07-26       Impact factor: 6.150

Review 9.  Autism genetics: searching for specificity and convergence.

Authors:  Jamee M Berg; Daniel H Geschwind
Journal:  Genome Biol       Date:  2012-07-31       Impact factor: 13.583

10.  Common genetic variants, acting additively, are a major source of risk for autism.

Authors:  Lambertus Klei; Stephan J Sanders; Michael T Murtha; Vanessa Hus; Jennifer K Lowe; A Jeremy Willsey; Daniel Moreno-De-Luca; Timothy W Yu; Eric Fombonne; Daniel Geschwind; Dorothy E Grice; David H Ledbetter; Catherine Lord; Shrikant M Mane; Christa Lese Martin; Donna M Martin; Eric M Morrow; Christopher A Walsh; Nadine M Melhem; Pauline Chaste; James S Sutcliffe; Matthew W State; Edwin H Cook; Kathryn Roeder; Bernie Devlin
Journal:  Mol Autism       Date:  2012-10-15       Impact factor: 7.509

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  25 in total

Review 1.  Disentangling the heterogeneity of autism spectrum disorder through genetic findings.

Authors:  Shafali S Jeste; Daniel H Geschwind
Journal:  Nat Rev Neurol       Date:  2014-01-28       Impact factor: 42.937

2.  Increased female autosomal burden of rare copy number variants in human populations and in autism families.

Authors:  G Desachy; L A Croen; A R Torres; M Kharrazi; G N Delorenze; G C Windham; C K Yoshida; L A Weiss
Journal:  Mol Psychiatry       Date:  2015-01-13       Impact factor: 15.992

3.  Single-Cell RNA Sequencing Reveals Cell-Type-Specific Mechanisms of Neurological Diseases.

Authors:  Zhen-Ge Luo; Jian Peng; Ting Li
Journal:  Neurosci Bull       Date:  2020-04-15       Impact factor: 5.203

4.  Prkn knockout mice show autistic-like behaviors and aberrant synapse formation.

Authors:  Yuda Huo; Wen Lu; Yuan Tian; Qingming Hou; Heng-Ye Man
Journal:  iScience       Date:  2022-06-10

5.  Autism traits in the RASopathies.

Authors:  Brigid Adviento; Iris L Corbin; Felicia Widjaja; Guillaume Desachy; Nicole Enrique; Tena Rosser; Susan Risi; Elysa J Marco; Robert L Hendren; Carrie E Bearden; Katherine A Rauen; Lauren A Weiss
Journal:  J Med Genet       Date:  2013-10-07       Impact factor: 6.318

Review 6.  The cerebellum, sensitive periods, and autism.

Authors:  Samuel S-H Wang; Alexander D Kloth; Aleksandra Badura
Journal:  Neuron       Date:  2014-08-06       Impact factor: 17.173

7.  Autism spectrum disorder severity reflects the average contribution of de novo and familial influences.

Authors:  Elise B Robinson; Kaitlin E Samocha; Jack A Kosmicki; Lauren McGrath; Benjamin M Neale; Roy H Perlis; Mark J Daly
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

Review 8.  The future of genomics for developmentalists.

Authors:  Robert Plomin; Michael A Simpson
Journal:  Dev Psychopathol       Date:  2013-11

9.  From mouse to human: evolutionary genomics analysis of human orthologs of essential genes.

Authors:  Benjamin Georgi; Benjamin F Voight; Maja Bućan
Journal:  PLoS Genet       Date:  2013-05-09       Impact factor: 5.917

10.  Motor abnormalities as a putative endophenotype for Autism Spectrum Disorders.

Authors:  Gianluca Esposito; Sergiu P Paşca
Journal:  Front Integr Neurosci       Date:  2013-06-11
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