Literature DB >> 23348837

Location, location, location: it's all in the timing for replication origins.

Oscar M Aparicio1.   

Abstract

The differential replication timing of eukaryotic replication origins has long been linked with epigenetic regulation of gene expression and more recently with genome stability and mutation rates; however, the mechanism has remained obscure. Recent studies have shed new light by identifying novel factors that determine origin timing in yeasts and mammalian cells and implicate the spatial organization of origins within nuclear territories in the mechanism. These new insights, along with recent findings that several initiation factors are limiting relative to licensed origins, support and shape an emerging model for replication timing control. The mechanisms that control the spatial organization of replication origins have potential impacts for genome regulation beyond replication.

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Year:  2013        PMID: 23348837      PMCID: PMC3566304          DOI: 10.1101/gad.209999.112

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  111 in total

1.  Genomic instability: close-up on cancer copy number alterations.

Authors:  Darren J Burgess
Journal:  Nat Rev Genet       Date:  2011-11-29       Impact factor: 53.242

Review 2.  Genetic variation and DNA replication timing, or why is there late replicating DNA?

Authors:  John Herrick
Journal:  Evolution       Date:  2011-08-05       Impact factor: 3.694

Review 3.  Space and time in the nucleus: developmental control of replication timing and chromosome architecture.

Authors:  D M Gilbert; S-I Takebayashi; T Ryba; J Lu; B D Pope; K A Wilson; I Hiratani
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-12-07

4.  Eukaryotic origin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases.

Authors:  Ryan C Heller; Sukhyun Kang; Wendy M Lam; Shuyan Chen; Clara S Chan; Stephen P Bell
Journal:  Cell       Date:  2011-07-08       Impact factor: 41.582

5.  Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast.

Authors:  Davide Mantiero; Amanda Mackenzie; Anne Donaldson; Philip Zegerman
Journal:  EMBO J       Date:  2011-11-11       Impact factor: 11.598

6.  Structure of a domain-swapped FOXP3 dimer on DNA and its function in regulatory T cells.

Authors:  Hozefa S Bandukwala; Yongqing Wu; Markus Feuerer; Yongheng Chen; Bianca Barboza; Srimoyee Ghosh; James C Stroud; Christophe Benoist; Diane Mathis; Anjana Rao; Lin Chen
Journal:  Immunity       Date:  2011-03-31       Impact factor: 31.745

7.  Palmitoylation controls the dynamics of budding-yeast heterochromatin via the telomere-binding protein Rif1.

Authors:  Sookhee Park; Erin E Patterson; Jenel Cobb; Anjon Audhya; Marc R Gartenberg; Catherine A Fox
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

8.  Cdc45 limits replicon usage from a low density of preRCs in mammalian cells.

Authors:  Philip G Wong; Sherry L Winter; Elena Zaika; Thinh V Cao; Umut Oguz; John M Koomen; Joyce L Hamlin; Mark G Alexandrow
Journal:  PLoS One       Date:  2011-03-01       Impact factor: 3.240

9.  The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.

Authors:  Hui-Yong Lian; E Douglas Robertson; Shin-ichiro Hiraga; Gina M Alvino; David Collingwood; Heather J McCune; Akila Sridhar; Bonita J Brewer; M K Raghuraman; Anne D Donaldson
Journal:  Mol Biol Cell       Date:  2011-03-25       Impact factor: 4.138

10.  Damage-induced phosphorylation of Sld3 is important to block late origin firing.

Authors:  Jaime Lopez-Mosqueda; Nancy L Maas; Zophonias O Jonsson; Lisa G Defazio-Eli; James Wohlschlegel; David P Toczyski
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

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  61 in total

1.  Rif1 binds to G quadruplexes and suppresses replication over long distances.

Authors:  Yutaka Kanoh; Seiji Matsumoto; Rino Fukatsu; Naoko Kakusho; Nobuaki Kono; Claire Renard-Guillet; Koji Masuda; Keisuke Iida; Kazuo Nagasawa; Katsuhiko Shirahige; Hisao Masai
Journal:  Nat Struct Mol Biol       Date:  2015-10-05       Impact factor: 15.369

2.  Activation of new replication foci under conditions of replication stress.

Authors:  P Rybak; A Waligórska; Ł Bujnowicz; A Hoang; J W Dobrucki
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

3.  Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae.

Authors:  A Zachary Ostrow; Reza Kalhor; Yan Gan; Sandra K Villwock; Christian Linke; Matteo Barberis; Lin Chen; Oscar M Aparicio
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

Review 4.  Replicating damaged DNA in eukaryotes.

Authors:  Nimrat Chatterjee; Wolfram Siede
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

5.  Form and function of topologically associating genomic domains in budding yeast.

Authors:  Umut Eser; Devon Chandler-Brown; Ferhat Ay; Aaron F Straight; Zhijun Duan; William Stafford Noble; Jan M Skotheim
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

6.  Position matters: multiple functions of LINC-dependent chromosome positioning during meiosis.

Authors:  Kazuhiro Katsumata; Eriko Nishi; Sadia Afrin; Kaoru Narusawa; Ayumu Yamamoto
Journal:  Curr Genet       Date:  2017-05-10       Impact factor: 3.886

7.  Shelterin components mediate genome reorganization in response to replication stress.

Authors:  Takeshi Mizuguchi; Nitika Taneja; Emiko Matsuda; Jon-Matthew Belton; Peter FitzGerald; Job Dekker; Shiv I S Grewal
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-10       Impact factor: 11.205

Review 8.  Regulation of the program of DNA replication by CDK: new findings and perspectives.

Authors:  Balveer Singh; Pei-Yun Jenny Wu
Journal:  Curr Genet       Date:  2018-06-20       Impact factor: 3.886

9.  Checkpoint-Independent Regulation of Origin Firing by Mrc1 through Interaction with Hsk1 Kinase.

Authors:  Seiji Matsumoto; Yutaka Kanoh; Michie Shimmoto; Motoshi Hayano; Kyosuke Ueda; Rino Fukatsu; Naoko Kakusho; Hisao Masai
Journal:  Mol Cell Biol       Date:  2017-03-17       Impact factor: 4.272

Review 10.  DNA Sequence Alignment during Homologous Recombination.

Authors:  Eric C Greene
Journal:  J Biol Chem       Date:  2016-04-15       Impact factor: 5.157

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