Literature DB >> 23345878

Simulation of the effect of reorientation of hydrogen bonds in proteins on long-range electron transfer.

Vladimir P Zhdanov1.   

Abstract

We present Monte Carlo simulations illustrating the influence of reorientation of hydrogen bonds in proteins on long-range interprotein electron transfer. The lattice protein model employed mimics the electron donor (or acceptor) interacting with an antiparallel β sheet. In addition, we take into account harmonic vibrations of the medium and also the dependence of the coupling matrix element on orientation of hydrogen bonds near the donor and/or acceptor. The results obtained show that the interaction between the tunneling electron and amino-acid residues, which are responsible for the formation of hydrogen bonds, may result in broadening the parabolic dependence of the electron-transfer rate constant on the reaction exothermicity and also in deviations from this dependence especially in the cases when the β sheet is linked with the electron donor.

Entities:  

Keywords:  Monte Carlo simulations; electron tunneling; lattice protein models; β sheets

Year:  2004        PMID: 23345878      PMCID: PMC3456316          DOI: 10.1007/s10867-004-2597-3

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  2 in total

1.  Surface-induced conformational changes in lattice model proteins by Monte Carlo simulation.

Authors:  Victoria Castells; Shaoxiong Yang; Paul R Van Tassel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-03-05

2.  Ligand binding to proteins: the binding landscape model.

Authors:  D W Miller; K A Dill
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

  2 in total

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