Literature DB >> 23345817

Comparison of Real Frequencies of Strings vs. the Expected Ones Reveals the Information Capacity of Macromoleculae.

Michael G Sadovsky1.   

Abstract

The information capacity of nucleotide sequences is defined through the calculation of specific entropy of their frequency dictionary. The specificentropy of the frequency dictionary is calculated against the reconstructeddictionary; this latter bears the most probable continuations of the shorterstrings. This developed measure allows to distinguish the sequences both from the randons ones, and from those with high level of (rather simple) order. Some implications of the developed methodology in the fields of genetics,bioinformatics, and molecular biology are discussed.

Keywords:  Markov model; dictionary; entropy; information capacity; ordered sequence; random sequence; reconstructed dictionary; specific entropy

Year:  2003        PMID: 23345817      PMCID: PMC3456843          DOI: 10.1023/A:1022554613105

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  19 in total

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Authors:  A Pavesi; B De Iaco; M I Granero; A Porati
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  5 in total

1.  Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution.

Authors:  Se-Ran Jun; Gregory E Sims; Guohong A Wu; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

2.  Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method.

Authors:  Guohong Albert Wu; Se-Ran Jun; Gregory E Sims; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

Review 3.  Genes, information and sense: complexity and knowledge retrieval.

Authors:  Michael G Sadovsky; Julia A Putintseva; Alexander S Shchepanovsky
Journal:  Theory Biosci       Date:  2008-04-29       Impact factor: 1.919

4.  Self-organization and entropy reduction in a living cell.

Authors:  Paul C W Davies; Elisabeth Rieper; Jack A Tuszynski
Journal:  Biosystems       Date:  2012-11-15       Impact factor: 1.973

5.  Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer.

Authors:  Qian Zhang; Se-Ran Jun; Michael Leuze; David Ussery; Intawat Nookaew
Journal:  Sci Rep       Date:  2017-01-19       Impact factor: 4.379

  5 in total

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