Literature DB >> 23345731

Crystalizing the genetic code.

L Frappat1, A Sciarrino, P Sorba.   

Abstract

New developments are presented in the framework of the model introduced bythe authors in References [1, 2] and in which nucleotides as well ascodons are classified in crystal bases of the quantum group U(q)(sl(2) ⊕ sl (2)) in the limit q → 0. An operator whichgives the correspondence between the amino-acids and the codons isobtained for any known genetic code. The free energy released by basepairing of dinucleotides as well as the relative hydrophilicity andhydrophobicity of the dinucleosides are also computed. For the vertebrateseries, a universal behaviour in the ratios of codon usage frequencies isput in evidence and is shown to fit nicely in our model. Then a firstattempt to represent the mutations relative to the deletion of apyrimidine by action of a suitable crystal spinor operator is proposed.Finally recent theoretial descriptions are reviewed and compared with ourmodel.PACS number: 87.10.+e, 02.10.-v.

Entities:  

Year:  2001        PMID: 23345731      PMCID: PMC3456396          DOI: 10.1023/A:1011874407742

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  10 in total

1.  The genetic code as a periodic table: algebraic aspects.

Authors:  J D Bashford; P D Jarvis
Journal:  Biosystems       Date:  2000 Aug-Sep       Impact factor: 1.973

2.  Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Authors:  D H Mathews; J Sabina; M Zuker; D H Turner
Journal:  J Mol Biol       Date:  1999-05-21       Impact factor: 5.469

3.  Algebraic model for the evolution of the genetic code.

Authors: 
Journal:  Phys Rev Lett       Date:  1993-12-27       Impact factor: 9.161

4.  [Classification of codons in the genetic code].

Authors:  B D Konopel'chenko; Iu B Rumer
Journal:  Dokl Akad Nauk SSSR       Date:  1975-06-11

5.  Codon usage tabulated from the international DNA sequence databases.

Authors:  Y Nakamura; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 6.  Chain termination codons and polymerase-induced frameshift mutations.

Authors:  J L Jestin; A Kempf
Journal:  FEBS Lett       Date:  1997-12-15       Impact factor: 4.124

7.  Selection, mutations and codon usage in a bacterial model.

Authors:  F Bagnoli; P Liò
Journal:  J Theor Biol       Date:  1995-04-07       Impact factor: 2.691

8.  The genetic code as a periodic table.

Authors:  J R Jungck
Journal:  J Mol Evol       Date:  1978-08-02       Impact factor: 2.395

9.  Genetic code correlations: amino acids and their anticodon nucleotides.

Authors:  A L Weber; J C Lacey
Journal:  J Mol Evol       Date:  1978-08-02       Impact factor: 2.395

10.  [Codon systematization in the genetic code].

Authors:  Iu B Rumer
Journal:  Dokl Akad Nauk SSSR       Date:  1966-04-21
  10 in total

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