Literature DB >> 23345676

Complex Formation of E. coli RNA Polymerase with Bacteriophage T2 DNA: Long-Range Effects in DNA.

S G Kamzolova1, N N Ivanova, S S Kamzalov.   

Abstract

Conformation behavior of phase T2 DNA in the process of its interaction with it E. coli RNA polymerase was studied using spin labeling technique. T2 DNA was modified by the spin-labeled imidazole at OH-groups of glucosylated cytidine residues. It was shown that the binding of RNA polymerase under the conditions favoring the formation of open promoter complexes induces specific conformational changes in the spin-labeled DNA. The observed conformational changes encompass not only the promoter regions of DNA which are involved in direct contacts with RNA polymerase molecules but extend over remote DNA sites (long-range effect). In relation to this effect, current theoretical models of DNA dynamics are discussed.

Entities:  

Keywords:  E. coli; N-(2,2′,5,5′-tetramethyl-3-carboxypyrrolidine-1-oxyl)-imidazole; RNA polymerase; T2 DNA; conformational transition; long-range effects; open promoter complex

Year:  1999        PMID: 23345676      PMCID: PMC3456593          DOI: 10.1023/A:1005135800715

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  22 in total

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Authors:  J D MANDELL; A D HERSHEY
Journal:  Anal Biochem       Date:  1960-06       Impact factor: 3.365

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Journal:  Phys Rev Lett       Date:  1989-06-05       Impact factor: 9.161

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Authors:  S G Kamzolova
Journal:  Biokhimiia       Date:  1987-09

Review 4.  Spin-labelled nucleic acids.

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5.  A simple method for determination of rotational correlation times and separation of rotational and polarity effects from EPR spectra of spin-labeled biomolecules in a wide correlation time range.

Authors:  H J Steinhoff
Journal:  J Biochem Biophys Methods       Date:  1988-12

Review 6.  Nonlinear dynamics of biopolymers: theoretical models, experimental data.

Authors:  L V Yakushevich
Journal:  Q Rev Biophys       Date:  1993-05       Impact factor: 5.318

7.  Dynamics and structures of DNA: long-range effects of a 16 base-pair (CG)8 sequence on secondary structure.

Authors:  U S Kim; B S Fujimoto; C E Furlong; J A Sundstrom; R Humbert; D C Teller; J M Schurr
Journal:  Biopolymers       Date:  1993-11       Impact factor: 2.505

Review 8.  Promoters responsive to DNA bending: a common theme in prokaryotic gene expression.

Authors:  J Pérez-Martín; F Rojo; V de Lorenzo
Journal:  Microbiol Rev       Date:  1994-06

9.  Context-dependent effects of upstream A-tracts. Stimulation or inhibition of Escherichia coli promoter function.

Authors:  T Ellinger; D Behnke; R Knaus; H Bujard; J D Gralla
Journal:  J Mol Biol       Date:  1994-06-17       Impact factor: 5.469

10.  Upstream curved sequences influence the initiation of transcription at the Escherichia coli galactose operon.

Authors:  M Lavigne; M Herbert; A Kolb; H Buc
Journal:  J Mol Biol       Date:  1992-03-20       Impact factor: 5.469

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