Literature DB >> 23345671

Results and limitations of the soliton theory of DNA transcription.

G Gaeta1.   

Abstract

It has been suggested by several authors that nonlinear excitations, in particular solitary waves, could play a fundamental functional role in the process of DNA transcription, effecting the opening of the double chain needed for RNA Polymerase to be able to copy the genetic code. Some models have been proposed to model the relevant DNA dynamics in terms of a reduced number of effective degrees of freedom. Here I discuss advantages and disadvantages of such an approach, and discuss in more detail one of the models, i.e. the one proposed by Yakushevich.

Keywords:  DNA; nonlinear excitations; solitons; transcription

Year:  1999        PMID: 23345671      PMCID: PMC3456592          DOI: 10.1023/A:1005158503806

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  11 in total

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Authors: 
Journal:  Phys Rev Lett       Date:  1993-06-21       Impact factor: 9.161

2.  Statistical mechanics of a nonlinear model for DNA denaturation.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-06-05       Impact factor: 9.161

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Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-06

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Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-01

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Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-12-01

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Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-11-15

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Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-08-01

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Authors:  A S Davydov
Journal:  J Theor Biol       Date:  1973-03       Impact factor: 2.691

Review 9.  Nonlinear dynamics of biopolymers: theoretical models, experimental data.

Authors:  L V Yakushevich
Journal:  Q Rev Biophys       Date:  1993-05       Impact factor: 5.318

10.  Nature of the open state in long polynucleotide double helices: possibility of soliton excitations.

Authors:  S W Englander; N R Kallenbach; A J Heeger; J A Krumhansl; S Litwin
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

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  2 in total

1.  Is DNA a nonlinear dynamical system where solitary conformational waves are possible?

Authors:  L V Yakushevich
Journal:  J Biosci       Date:  2001-09       Impact factor: 1.826

2.  Salerno's model of DNA re-analysed: could breather solitons have biological significance?

Authors:  J D Bashford
Journal:  J Biol Phys       Date:  2006-01       Impact factor: 1.365

  2 in total

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