Literature DB >> 23340599

Building synthetic gene circuits from combinatorial libraries: screening and selection strategies.

Yolanda Schaerli1, Mark Isalan.   

Abstract

The promise of wide-ranging biotechnology applications inspires synthetic biologists to design novel genetic circuits. However, building such circuits rationally is still not straightforward and often involves painstaking trial-and-error. Mimicking the process of natural selection can help us to bridge the gap between our incomplete understanding of nature's design rules and our desire to build functional networks. By adopting the powerful method of directed evolution, which is usually applied to protein engineering, functional networks can be obtained through screening or selecting from randomised combinatorial libraries. This review first highlights the practical options to introduce combinatorial diversity into gene circuits and then examines strategies for identifying the potentially rare library members with desired functions, either by screening or selection.

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Year:  2013        PMID: 23340599     DOI: 10.1039/c2mb25483b

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  15 in total

1.  Isolating live cells after high-throughput, long-term, time-lapse microscopy.

Authors:  Scott Luro; Laurent Potvin-Trottier; Burak Okumus; Johan Paulsson
Journal:  Nat Methods       Date:  2019-11-25       Impact factor: 28.547

2.  Designing de novo: interdisciplinary debates in synthetic biology.

Authors:  Ana Delgado; Manuel Porcar
Journal:  Syst Synth Biol       Date:  2013-04-09

3.  A split intein T7 RNA polymerase for transcriptional AND-logic.

Authors:  Yolanda Schaerli; Magüi Gili; Mark Isalan
Journal:  Nucleic Acids Res       Date:  2014-09-27       Impact factor: 16.971

Review 4.  In vivo continuous directed evolution.

Authors:  Ahmed H Badran; David R Liu
Journal:  Curr Opin Chem Biol       Date:  2014-11-07       Impact factor: 8.822

5.  Rapid and liquid-based selection of genetic switches using nucleoside kinase fused with aminoglycoside phosphotransferase.

Authors:  Masahiro Tominaga; Kohei Ike; Shigeko Kawai-Noma; Kyoichi Saito; Daisuke Umeno
Journal:  PLoS One       Date:  2015-03-19       Impact factor: 3.240

6.  Distributed classifier based on genetically engineered bacterial cell cultures.

Authors:  Andriy Didovyk; Oleg I Kanakov; Mikhail V Ivanchenko; Jeff Hasty; Ramón Huerta; Lev Tsimring
Journal:  ACS Synth Biol       Date:  2014-11-11       Impact factor: 5.110

7.  Multi-input distributed classifiers for synthetic genetic circuits.

Authors:  Oleg Kanakov; Roman Kotelnikov; Ahmed Alsaedi; Lev Tsimring; Ramón Huerta; Alexey Zaikin; Mikhail Ivanchenko
Journal:  PLoS One       Date:  2015-05-06       Impact factor: 3.240

8.  Bacterial Microcolonies in Gel Beads for High-throughput Screening.

Authors:  Yolanda Schaerli
Journal:  Bio Protoc       Date:  2018-07-05

9.  Latent phenotypes pervade gene regulatory circuits.

Authors:  Joshua L Payne; Andreas Wagner
Journal:  BMC Syst Biol       Date:  2014-05-30

10.  A unified design space of synthetic stripe-forming networks.

Authors:  Yolanda Schaerli; Andreea Munteanu; Magüi Gili; James Cotterell; James Sharpe; Mark Isalan
Journal:  Nat Commun       Date:  2014-09-23       Impact factor: 14.919

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