Literature DB >> 23336846

Solvation dynamics of biological water in a single live cell under a confocal microscope.

Dibyendu Kumar Sasmal1, Shirsendu Ghosh, Atanu Kumar Das, Kankan Bhattacharyya.   

Abstract

Time-resolved confocal microscopy has been applied to study the cytoplasm and nucleus region of a single live Chinese hamster ovary (CHO) cell. To select the cytoplasm and the nucleus region, two different fluorescent probes are used. A hydrophobic fluorescent dye, DCM, localizes preferentially in the cytoplasm region of a CHO cell. A DNA binding dye, DAPI, is found to be inside the nucleus of the cell. The locations of the probes are clearly seen in the image. Emission maxima of the dyes (DCM in cytoplasm and DAPI in the nucleus) are compared to those of the same dyes in different solvents. From this, it is concluded that the polarity (dielectric constant, ε) of the microenvironment of DCM in the cytoplasm is ~15. The nucleus is found to be much more polar with ε ≈ 60 (as reported by DAPI). The diffusion coefficient (and hence viscosity) in the cytoplasm and the nucleus was determined using fluorescence correlation spectroscopy (FCS). The diffusion coefficient (D(t)) of the dye (DCM) in the cytoplasm is 2 μm(2) s(-1) and is ~150 times slower than that in bulk water (buffer). D(t) of DAPI in the nucleus (15 μm(2) s(-1)) is 30 times slower than that in bulk water (buffer). The extremely slow diffusion inside the cell has been ascribed to higher viscosity and also to the binding of the probes (DCM and DAPI) to large biological macromolecules. The solvation dynamics of water in the cytoplasm (monitored by DCM) exhibits an average relaxation time [τ(sol)] of 1250 ± 50 ps, which is about 1000 times slower than in bulk water (1 ps). The solvation dynamics inside the nucleus (studied using DAPI) is about 2-fold faster, [τ(sol)] ≈ 775 ps. The higher polarity, faster diffusion, and faster solvation dynamics in the nucleus indicates that it is less crowded and less restricted than the cytoplasm.

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Year:  2013        PMID: 23336846     DOI: 10.1021/la3043473

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  9 in total

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Review 2.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

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Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

3.  Evaluation of weak interactions of proteins and organic cations with DNA duplex structures.

Authors:  Ryuta Morimoto; Masao Horita; Daisuke Yamaguchi; Hiroki Nakai; Shu-Ichi Nakano
Journal:  Biophys J       Date:  2022-07-05       Impact factor: 3.699

4.  Increasing the Potential of the Auristatin Cancer-Drug Family by Shifting the Conformational Equilibrium.

Authors:  Iris K Sokka; Filip S Ekholm; Mikael P Johansson
Journal:  Mol Pharm       Date:  2019-06-28       Impact factor: 4.939

5.  Using intracellular plasmonics to characterize nanomorphology in human cells.

Authors:  Ahmad Sohrabi Kashani; Alisa Piekny; Muthukumaran Packirisamy
Journal:  Microsyst Nanoeng       Date:  2020-12-14       Impact factor: 7.127

6.  The effect of macromolecular crowding on the electrostatic component of barnase-barstar binding: a computational, implicit solvent-based study.

Authors:  Helena W Qi; Priyanka Nakka; Connie Chen; Mala L Radhakrishnan
Journal:  PLoS One       Date:  2014-06-10       Impact factor: 3.240

7.  A stochastic chemical dynamic approach to correlate autoimmunity and optimal vitamin-D range.

Authors:  Susmita Roy; Krishna Shrinivas; Biman Bagchi
Journal:  PLoS One       Date:  2014-06-27       Impact factor: 3.240

8.  RNA Hairpin Folding in the Crowded Cell.

Authors:  Mimi Gao; David Gnutt; Axel Orban; Bettina Appel; Francesco Righetti; Roland Winter; Franz Narberhaus; Sabine Müller; Simon Ebbinghaus
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-02       Impact factor: 15.336

9.  Optical mapping of biological water in single live cells by stimulated Raman excited fluorescence microscopy.

Authors:  Lixue Shi; Fanghao Hu; Wei Min
Journal:  Nat Commun       Date:  2019-10-18       Impact factor: 14.919

  9 in total

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