Literature DB >> 23335361

A simple integrated system for rapid analysis of sialic-acid-containing N-glycopeptides from human serum.

Jun Zhu1, Fangjun Wang, Kai Cheng, Jing Dong, Deguang Sun, Rui Chen, Liming Wang, Mingliang Ye, Hanfa Zou.   

Abstract

Terminal sialylation is very important in cancer biology and has been extensively investigated for the discovery of potential clinical biomarkers of cancers. In this study, we presented a novel approach, by using of Ti(IV)-IMAC, to enrich sialic-acid-containing N-glycopeptides for the analysis of terminal sialylation. Compared with conventional method using TiO2 , this approach obtained 2.5 times more glycopeptides and glycosylation sites. Then, a simple integrated system combining filter-aided sample preparation, ACN-improved digestion, and Ti(IV)-IMAC enrichment was established for efficient analysis. In this system, protein digestion, glycopeptide enrichment, and deglycosylation were integrated and were performed sequentially in a single filter unit without any need for desalting, lyophilization, or sample transfer procedures. As a result, the number of identifications was improved by 1.5-fold and the total processing time was drastically reduced to only 7-8 h. By using this system, fast and efficient analysis of human serum sialylated N-glycoproteome was achieved. From only 1 μL of human serum, 217 unique glycopeptides and 194 glycosylation sites were successfully identified.
© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2013        PMID: 23335361     DOI: 10.1002/pmic.201200367

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  7 in total

Review 1.  Extracellular Protein Phosphorylation, the Neglected Side of the Modification.

Authors:  Eva Klement; Katalin F Medzihradszky
Journal:  Mol Cell Proteomics       Date:  2016-11-10       Impact factor: 5.911

2.  Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher-energy collision dissociation (EThcD).

Authors:  Zhengwei Chen; Qing Yu; Ling Hao; Fabao Liu; Jillian Johnson; Zichuan Tian; W John Kao; Wei Xu; Lingjun Li
Journal:  Analyst       Date:  2018-05-29       Impact factor: 4.616

3.  Enrichment of Intact Glycopeptides Using Strong Anion Exchange and Electrostatic Repulsion Hydrophilic Interaction Chromatography.

Authors:  Abel Bermudez; Sharon J Pitteri
Journal:  Methods Mol Biol       Date:  2021

4.  Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012.

Authors:  Nancy Leymarie; Paula J Griffin; Karen Jonscher; Daniel Kolarich; Ron Orlando; Mark McComb; Joseph Zaia; Jennifer Aguilan; William R Alley; Friederich Altmann; Lauren E Ball; Lipika Basumallick; Carthene R Bazemore-Walker; Henning Behnken; Michael A Blank; Kristy J Brown; Svenja-Catharina Bunz; Christopher W Cairo; John F Cipollo; Rambod Daneshfar; Heather Desaire; Richard R Drake; Eden P Go; Radoslav Goldman; Clemens Gruber; Adnan Halim; Yetrib Hathout; Paul J Hensbergen; David M Horn; Deanna Hurum; Wolfgang Jabs; Göran Larson; Mellisa Ly; Benjamin F Mann; Kristina Marx; Yehia Mechref; Bernd Meyer; Uwe Möginger; Christian Neusüβ; Jonas Nilsson; Milos V Novotny; Julius O Nyalwidhe; Nicolle H Packer; Petr Pompach; Bela Reiz; Anja Resemann; Jeffrey S Rohrer; Alexandra Ruthenbeck; Miloslav Sanda; Jan Mirco Schulz; Ulrike Schweiger-Hufnagel; Carina Sihlbom; Ehwang Song; Gregory O Staples; Detlev Suckau; Haixu Tang; Morten Thaysen-Andersen; Rosa I Viner; Yanming An; Leena Valmu; Yoshinao Wada; Megan Watson; Markus Windwarder; Randy Whittal; Manfred Wuhrer; Yiying Zhu; Chunxia Zou
Journal:  Mol Cell Proteomics       Date:  2013-06-13       Impact factor: 5.911

Review 5.  Protein-centric N-glycoproteomics analysis of membrane and plasma membrane proteins.

Authors:  Bingyun Sun; Leroy Hood
Journal:  J Proteome Res       Date:  2014-05-01       Impact factor: 4.466

6.  Microfluidic Chip-LC/MS-based Glycomic Analysis Revealed Distinct N-glycan Profile of Rat Serum.

Authors:  Wei-Na Gao; Lee-Fong Yau; Liang Liu; Xing Zeng; Da-Can Chen; Min Jiang; Ju Liu; Jing-Rong Wang; Zhi-Hong Jiang
Journal:  Sci Rep       Date:  2015-08-07       Impact factor: 4.379

Review 7.  A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics.

Authors:  Nicholas M Riley; Carolyn R Bertozzi; Sharon J Pitteri
Journal:  Mol Cell Proteomics       Date:  2020-12-20       Impact factor: 5.911

  7 in total

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