Literature DB >> 23334931

Candidate target genes for the Saccharomyces cerevisiae transcription factor, Yap2.

Seo Young Bang1, Jeong Hoon Kim, Phil Young Lee, Seung-Wook Chi, Sayeon Cho, Gwan-Su Yi, Pyung Keun Myung, Byoung Chul Park, Kwang-Hee Bae, Sung Goo Park.   

Abstract

In Saccharomyces cerevisiae, the Yap family of basic leucine zipper (bZip) proteins contains eight members. The Yap family proteins are implicated in a variety of stress responses; among these proteins, Yap1 acts as a major regulator of oxidative stress responses. However, the functional roles of the remaining Yap family members are poorly understood. To elucidate the function of Yap2, we mined candidate target genes of Yap2 by proteomic analysis. Among the identified genes, FRM2 was previously identified as a target gene of Yap2, which confirmed the validity of our screening method. YNL134C and YDL124W were also identified as candidate Yap2 target genes. These genes were upregulated in strains overexpressing Yap2 and possess Yap2 target sequences in their promoter regions. Furthermore, chromatin immunoprecipitation assays showed that YNL134C and YDL124W have Yap2 binding motif. These data will help to elucidate the functional role of Yap2.

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Year:  2013        PMID: 23334931     DOI: 10.1007/s12223-013-0224-z

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN: 0015-5632            Impact factor:   2.099


  24 in total

1.  Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: a method for the removal of silver ions to enhance sensitivity.

Authors:  F Gharahdaghi; C R Weinberg; D A Meagher; B S Imai; S M Mische
Journal:  Electrophoresis       Date:  1999-03       Impact factor: 3.535

2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

3.  A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

Authors:  Kai Tan; Hoda Feizi; Colin Luo; Stephanie H Fan; Timothy Ravasi; Trey G Ideker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

4.  Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.

Authors:  A Shevchenko; M Wilm; O Vorm; M Mann
Journal:  Anal Chem       Date:  1996-03-01       Impact factor: 6.986

5.  Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks.

Authors:  Barak A Cohen; Yitzhak Pilpel; Robi D Mitra; George M Church
Journal:  Mol Biol Cell       Date:  2002-05       Impact factor: 4.138

6.  The S. cerevisiae Yap1 and Yap2 transcription factors share a common cadmium-sensing domain.

Authors:  Dulce Azevedo; Liliana Nascimento; Jean Labarre; Michel B Toledano; Claudina Rodrigues-Pousada
Journal:  FEBS Lett       Date:  2006-12-13       Impact factor: 4.124

7.  Global protein expression profiling of budding yeast in response to DNA damage.

Authors:  Min-Woo Lee; Beom-Jun Kim; Hyun-Kyung Choi; Min-Jung Ryu; Sang-Bae Kim; Kyung-Min Kang; Eun-Jung Cho; Hong-Duk Youn; Won-Ki Huh; Seong-Tae Kim
Journal:  Yeast       Date:  2007-03       Impact factor: 3.239

8.  The yeast stress response. Role of the Yap family of b-ZIP transcription factors. The PABMB Lecture delivered on 30 June 2004 at the 29th FEBS Congress in Warsaw.

Authors:  Claudina Rodrigues-Pousada; Tracy Nevitt; Regina Menezes
Journal:  FEBS J       Date:  2005-06       Impact factor: 5.542

9.  The Ca2+ homeostasis defects in a pgm2Delta strain of Saccharomyces cerevisiae are caused by excessive vacuolar Ca2+ uptake mediated by the Ca2+-ATPase Pmc1p.

Authors:  David P Aiello; Lianwu Fu; Attila Miseta; Katalin Sipos; David M Bedwell
Journal:  J Biol Chem       Date:  2004-07-13       Impact factor: 5.157

10.  The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Authors:  Miguel C Teixeira; Pedro Monteiro; Pooja Jain; Sandra Tenreiro; Alexandra R Fernandes; Nuno P Mira; Marta Alenquer; Ana T Freitas; Arlindo L Oliveira; Isabel Sá-Correia
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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