Literature DB >> 23334558

Comprehensive studies on the tautomerization of glycine: a theoretical study.

Chang Kon Kim1, Byung-Ho Park, Hai Whang Lee, Chan Kyung Kim.   

Abstract

The tautomerization process of glycine between the neutral (NE) and zwitterionic (ZW) forms in aqueous solution was explored theoretically using the conductor-like polarizable continuum model (CPCM) by adopting the PAULING cavity model at the B3LYP, MP2 and CCSD levels with the 6-311+G(d,p) basis set. The tautomerization of glycine is unable to be predicted satisfactorily within the equilibrated framework of the CPCM method. Instead, in this study, three plausible non-equilibrated solvation situations were assumed: (S-1) one water molecule attached to the transferring proton in the ZW moves together with the transferring proton; (S-2) one water molecule attached to the transferring proton in the ZW remains motionless at a fixed position near the NH(2) fragment at the TS structure; and (S-3) proton transfer occurs without changing the position of the surrounding water molecules from their initial state, the ZW form, in the eight water clusters. Although the calculation of (S-3) failed, the Gibbs free energies of activation for tautomerization from the ZW to NE, ΔG(≠)(ZW → NE), was well consistent with the experimental findings in the hypothetical non-equilibrated solvation states of (S-1) and (S-2). This suggests that non-equilibrium solvation is essential to explain the observed experimental data.

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Year:  2013        PMID: 23334558     DOI: 10.1039/c2ob26602d

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  2 in total

1.  A computational model of the glycine tautomerization reaction in aqueous solution.

Authors:  Santiago Tolosa; Antonio Hidalgo; Jorge A Sansón
Journal:  J Mol Model       Date:  2014-02-22       Impact factor: 1.810

2.  Computational elucidation of the binding mechanisms of curcumin analogues as bacterial RecA inhibitors.

Authors:  Zi-Yuan Zhou; Jing Yuan; Qing Pan; Xiao-Mei Mo; Yong-Li Xie; Feng Yin; Zigang Li; Nai-Kei Wong
Journal:  RSC Adv       Date:  2019-06-25       Impact factor: 4.036

  2 in total

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