Literature DB >> 23333034

U-turn DNA bending by human mitochondrial transcription factor A.

Anna Rubio-Cosials1, Maria Solà.   

Abstract

Transcription factor A (TFAM) is involved in the transcription regulation, maintenance and compaction of the mitochondrial genome. Recent structural data on TFAM showed its mode of operation and clarified previous biochemical and genetic results. In solution, TFAM is highly dynamic. According to crystal structures of its complex with the cognate light-strand promoter (LSP) binding sequence, it intertwines and dramatically bends DNA, thereby allowing interactions with the transcription initiation machinery. Recent studies have shown TFAM sliding on non-specific DNA, which induces compaction by increasing DNA flexibility. Finally, the structural localization of disease-related TFAM mutations suggests functional impairment at the molecular level.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23333034     DOI: 10.1016/j.sbi.2012.12.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  12 in total

1.  Cytosine methylation of mitochondrial DNA at CpG sequences impacts transcription factor A DNA binding and transcription.

Authors:  Vishantie Dostal; Mair E A Churchill
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-02-23       Impact factor: 4.490

2.  DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region.

Authors:  Anna Cuppari; Pablo Fernández-Millán; Federica Battistini; Aleix Tarrés-Solé; Sébastien Lyonnais; Guillermo Iruela; Elena Ruiz-López; Yuliana Enciso; Anna Rubio-Cosials; Rafel Prohens; Miquel Pons; Carlos Alfonso; Katalin Tóth; Germán Rivas; Modesto Orozco; Maria Solà
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

3.  A novel intermediate in transcription initiation by human mitochondrial RNA polymerase.

Authors:  Yaroslav I Morozov; Karen Agaronyan; Alan C M Cheung; Michael Anikin; Patrick Cramer; Dmitry Temiakov
Journal:  Nucleic Acids Res       Date:  2014-01-06       Impact factor: 16.971

Review 4.  Functional Mitochondria in Health and Disease.

Authors:  Patries M Herst; Matthew R Rowe; Georgia M Carson; Michael V Berridge
Journal:  Front Endocrinol (Lausanne)       Date:  2017-11-03       Impact factor: 5.555

5.  The human mitochondrial transcription factor A is a versatile G-quadruplex binding protein.

Authors:  Sébastien Lyonnais; Aleix Tarrés-Solé; Anna Rubio-Cosials; Anna Cuppari; Reicy Brito; Joaquim Jaumot; Raimundo Gargallo; Marta Vilaseca; Cristina Silva; Anton Granzhan; Marie-Paule Teulade-Fichou; Ramon Eritja; Maria Solà
Journal:  Sci Rep       Date:  2017-03-09       Impact factor: 4.379

6.  DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p.

Authors:  Arka Chakraborty; Sébastien Lyonnais; Federica Battistini; Adam Hospital; Giorgio Medici; Rafel Prohens; Modesto Orozco; Josep Vilardell; Maria Solà
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

Review 7.  Single-molecule studies of high-mobility group B architectural DNA bending proteins.

Authors:  Divakaran Murugesapillai; Micah J McCauley; L James Maher; Mark C Williams
Journal:  Biophys Rev       Date:  2016-11-15

8.  NAFlex: a web server for the study of nucleic acid flexibility.

Authors:  Adam Hospital; Ignacio Faustino; Rosana Collepardo-Guevara; Carlos González; Josep Lluis Gelpí; Modesto Orozco
Journal:  Nucleic Acids Res       Date:  2013-05-17       Impact factor: 16.971

9.  Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.

Authors:  Huu B Ngo; Geoffrey A Lovely; Rob Phillips; David C Chan
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

10.  Allostery through protein-induced DNA bubbles.

Authors:  Joseph J Traverso; Valipuram S Manoranjan; A R Bishop; Kim Ø Rasmussen; Nikolaos K Voulgarakis
Journal:  Sci Rep       Date:  2015-03-12       Impact factor: 4.379

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