Literature DB >> 23329324

Genetic analysis of the VP4/VP2 coding region in human rhinovirus species C in patients with acute respiratory infection in Japan.

Naoko Kiyota1, Izumi Kushibuchi2, Miho Kobayashi3, Hiroyuki Tsukagoshi3, Akihide Ryo4, Koichi Nishimura1, Asumi Hirata-Saito2, Seiya Harada1, Mika Arakawa2, Kunihisa Kozawa3, Masahiro Noda5, Hirokazu Kimura5.   

Abstract

Detailed genetic analysis was carried out of the VP4/VP2 coding region in human rhinovirus species C (HRV-C) strains detected in patients with acute respiratory infection in Japan. Phylogenetic trees were constructed by the neighbour-joining (NJ) and maximum-likelihood (ML) methods. The NJ phylogenetic tree assigned 11 genotypes to the present strains, whilst the ML tree showed that the strains diversified sometime in the early 1870 s. Moreover, the pairwise distance among the present strains was relatively long, and the rate of molecular evolution of the coding region was rapid (3.07 × 10(-3) substitutions per site per year). The results suggest that the present HRV-C strains have a wide genetic divergence and a unique evolutionary timescale.

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Year:  2013        PMID： 23329324     DOI： 10.1099/jmm.0.049072-0

Source DB:  PubMed          Journal:  J Med Microbiol        ISSN： 0022-2615            Impact factor:   2.472


  7 in total

1.  Species distribution of clinical Acinetobacter isolates revealed by different identification techniques.

Authors:  Jianfeng Wang; Zhi Ruan; Ye Feng; Ying Fu; Yan Jiang; Haiping Wang; Yunsong Yu
Journal:  PLoS One       Date:  2014-08-13       Impact factor: 3.240

Review 2.  Epidemiology of virus-induced asthma exacerbations: with special reference to the role of human rhinovirus.

Authors:  Takeshi Saraya; Daisuke Kurai; Haruyuki Ishii; Anri Ito; Yoshiko Sasaki; Shoichi Niwa; Naoko Kiyota; Hiroyuki Tsukagoshi; Kunihisa Kozawa; Hajime Goto; Hajime Takizawa
Journal:  Front Microbiol       Date:  2014-05-26       Impact factor: 5.640

3.  Epidemiological analysis and follow-up of human rhinovirus infection in children with asthma exacerbation.

Authors:  Shou-Yan Zheng; Li-Li Wang; Luo Ren; Jian Luo; Wei Liao; En-Mei Liu
Journal:  J Med Virol       Date:  2017-10-27       Impact factor: 2.327

Review 4.  Molecular epidemiology of respiratory viruses in virus-induced asthma.

Authors:  Hiroyuki Tsukagoshi; Taisei Ishioka; Masahiro Noda; Kunihisa Kozawa; Hirokazu Kimura
Journal:  Front Microbiol       Date:  2013-09-12       Impact factor: 5.640

5.  Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C.

Authors:  Makoto Kuroda; Shoichi Niwa; Tsuyoshi Sekizuka; Hiroyuki Tsukagoshi; Masaru Yokoyama; Akihide Ryo; Hironori Sato; Naoko Kiyota; Masahiro Noda; Kunihisa Kozawa; Komei Shirabe; Takashi Kusaka; Naoki Shimojo; Shunji Hasegawa; Kazuko Sugai; Masatsugu Obuchi; Masato Tashiro; Kazunori Oishi; Haruyuki Ishii; Hirokazu Kimura
Journal:  Sci Rep       Date:  2015-02-02       Impact factor: 4.379

6.  Serotype and genetic diversity of human rhinovirus strains that circulated in Kenya in 2008.

Authors:  Sylvia Milanoi; Juliette R Ongus; George Gachara; Rodney Coldren; Wallace Bulimo
Journal:  Influenza Other Respir Viruses       Date:  2016-03-02       Impact factor: 4.380

7.  Pathogen profiles and molecular epidemiology of respiratory viruses in Japanese inpatients with community-acquired pneumonia.

Authors:  Daisuke Kurai; Yoshiko Sasaki; Takeshi Saraya; Haruyuki Ishii; Hiroyuki Tsukagoshi; Kunihisa Kozawa; Akihide Ryo; Taisei Ishioka; Makoto Kuroda; Kazunori Oishi; Hajime Takizawa; Hirokazu Kimura
Journal:  Respir Investig       Date:  2016-03-17
  7 in total

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