Literature DB >> 23327428

Structural and mechanistic characterization of L-histidinol phosphate phosphatase from the polymerase and histidinol phosphatase family of proteins.

Swapnil V Ghodge1, Alexander A Fedorov, Elena V Fedorov, Brandan Hillerich, Ronald Seidel, Steven C Almo, Frank M Raushel.   

Abstract

L-Histidinol phosphate phosphatase (HPP) catalyzes the hydrolysis of L-histidinol phosphate to L-histidinol and inorganic phosphate, the penultimate step in the biosynthesis of L-histidine. HPP from the polymerase and histidinol phosphatase (PHP) family of proteins possesses a trinuclear active site and a distorted (β/α)(7)-barrel protein fold. This group of enzymes is closely related to the amidohydrolase superfamily of enzymes. The mechanism of phosphomonoester bond hydrolysis by the PHP family of HPP enzymes was addressed. Recombinant HPP from Lactococcus lactis subsp. lactis that was expressed in Escherichia coli contained a mixture of iron and zinc in the active site and had a catalytic efficiency of ~10(3) M(-1) s(-1). Expression of the protein under iron-free conditions resulted in the production of an enzyme with a 2 order of magnitude improvement in catalytic efficiency and a mixture of zinc and manganese in the active site. Solvent isotope and viscosity effects demonstrated that proton transfer steps and product dissociation steps are not rate-limiting. X-ray structures of HPP were determined with sulfate, L-histidinol phosphate, and a complex of L-histidinol and arsenate bound in the active site. These crystal structures and the catalytic properties of variants were used to identify the structural elements required for catalysis and substrate recognition by the HPP family of enzymes within the amidohydrolase superfamily.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23327428      PMCID: PMC3570733          DOI: 10.1021/bi301496p

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  32 in total

1.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

2.  Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution.

Authors:  Leonard Apeltsin; John H Morris; Patricia C Babbitt; Thomas E Ferrin
Journal:  Bioinformatics       Date:  2010-11-29       Impact factor: 6.937

3.  Phosphoesterase domains associated with DNA polymerases of diverse origins.

Authors:  L Aravind; E V Koonin
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

4.  An evolutionary treasure: unification of a broad set of amidohydrolases related to urease.

Authors:  L Holm; C Sander
Journal:  Proteins       Date:  1997-05

5.  Three-dimensional structure and catalytic mechanism of cytosine deaminase.

Authors:  Richard S Hall; Alexander A Fedorov; Chengfu Xu; Elena V Fedorov; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2011-05-12       Impact factor: 3.162

6.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

7.  Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

Authors:  Holly J Atkinson; John H Morris; Thomas E Ferrin; Patricia C Babbitt
Journal:  PLoS One       Date:  2009-02-03       Impact factor: 3.240

8.  Cytoscape 2.8: new features for data integration and network visualization.

Authors:  Michael E Smoot; Keiichiro Ono; Johannes Ruscheinski; Peng-Liang Wang; Trey Ideker
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
View more
  10 in total

Review 1.  Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks.

Authors:  John A Gerlt; Jason T Bouvier; Daniel B Davidson; Heidi J Imker; Boris Sadkhin; David R Slater; Katie L Whalen
Journal:  Biochim Biophys Acta       Date:  2015-04-18

2.  Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis.

Authors:  Bhavya Jha; Deepak Kumar; Arun Sharma; Abhisek Dwivedy; Ramandeep Singh; Bichitra Kumar Biswal
Journal:  J Biol Chem       Date:  2018-05-11       Impact factor: 5.157

3.  Structural Studies of Medicago truncatula Histidinol Phosphate Phosphatase from Inositol Monophosphatase Superfamily Reveal Details of Penultimate Step of Histidine Biosynthesis in Plants.

Authors:  Milosz Ruszkowski; Zbigniew Dauter
Journal:  J Biol Chem       Date:  2016-03-18       Impact factor: 5.157

4.  Biosynthesis of fosfomycin in pseudomonads reveals an unexpected enzymatic activity in the metallohydrolase superfamily.

Authors:  Max A Simon; Chayanid Ongpipattanakul; Satish K Nair; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

5.  Discovery of a cyclic phosphodiesterase that catalyzes the sequential hydrolysis of both ester bonds to phosphorus.

Authors:  Swapnil V Ghodge; Jennifer A Cummings; Howard J Williams; Frank M Raushel
Journal:  J Am Chem Soc       Date:  2013-10-24       Impact factor: 15.419

6.  Prospecting for unannotated enzymes: discovery of a 3',5'-nucleotide bisphosphate phosphatase within the amidohydrolase superfamily.

Authors:  Jennifer A Cummings; Matthew Vetting; Swapnil V Ghodge; Chengfu Xu; Brandan Hillerich; Ronald D Seidel; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2014-01-13       Impact factor: 3.162

7.  An atypical phosphodiesterase capable of degrading haloalkyl phosphate diesters from Sphingobium sp. strain TCM1.

Authors:  Katsumasa Abe; Naoko Mukai; Yuka Morooka; Takeshi Makino; Kenji Oshima; Shouji Takahashi; Yoshio Kera
Journal:  Sci Rep       Date:  2017-06-06       Impact factor: 4.379

8.  l-Galactose metabolism in Bacteroides vulgatus from the human gut microbiota.

Authors:  Merlin Eric Hobbs; Howard J Williams; Brandan Hillerich; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2014-07-07       Impact factor: 3.162

9.  High-fidelity DNA replication in Mycobacterium tuberculosis relies on a trinuclear zinc center.

Authors:  Soledad Baños-Mateos; Anne-Marie M van Roon; Ulla F Lang; Sarah L Maslen; J Mark Skehel; Meindert H Lamers
Journal:  Nat Commun       Date:  2017-10-11       Impact factor: 14.919

10.  Sequence-based identification of inositol monophosphatase-like histidinol-phosphate phosphatases (HisN) in Corynebacterium glutamicum, Actinobacteria, and beyond.

Authors:  Robert Kasimir Kulis-Horn; Christian Rückert; Jörn Kalinowski; Marcus Persicke
Journal:  BMC Microbiol       Date:  2017-07-18       Impact factor: 3.605

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.