| Literature DB >> 23326512 |
Tiffany A Greenwood1, John R Kelsoe.
Abstract
The use of clinical features to define subtypes of a disorder may aid in gene identification for complex diseases. In particular, clinical subtypes of mania may distinguish phenotypic subgroups of bipolar subjects that may also differ genetically. To assess this possibility, we performed a genome-wide association study using genotype data from the Bipolar Genome Study (BiGS) and subjects that were categorized as having either irritable or elated mania during their most severe episode. A bipolar case-only analysis in the GAIN bipolar sample identified several genomic regions that differed between irritable and elated subjects, the most significant of which was for 33 SNPs on chromosome 13q31 (peak p = 2×10(-7)). This broad peak is in a relative gene desert over an unknown EST and between the SLITRK1 and SLITRK6 genes. Evidence for association to this region came predominantly from subjects in the sample that were originally collected as part of a family-based bipolar linkage study, rather than those collected as bipolar singletons. We then genotyped an additional sample of bipolar singleton cases and controls, and the analysis of irritable vs. elated mania in this new sample did not replicate our previous findings. However, this lack of replication is likely due to the presence of significant differences in terms of clinical co-morbity that were identified between these singleton bipolar cases and those that were selected from families segregating the disorder. Despite these clinical differences, analysis of the combined sample provided continued support for 13q31 and other regions from our initial analysis. Though genome-wide significance was not achieved, our results suggest that irritable mania results from a distinct set of genes, including a region on chromosome 13q31.Entities:
Mesh:
Year: 2013 PMID: 23326512 PMCID: PMC3542199 DOI: 10.1371/journal.pone.0053804
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Description of the subjects in the GAIN, TGEN, and combined datasets that were available for analysis.
| Sample | # GAIN | # TGEN | # Combined |
| Irritable Mania | 117 | 121 | 238 |
| Elated Mania | 843 | 1026 | 1869 |
| All Bipolars | 1001 | 1190 | 2191 |
| Controls | 1033 | 401 | 1434 |
Figure 1Genome-wide association results of the irritable vs. elated mania case-only analyses in the GAIN sample.
The physical position is shown along the x-axis, color-coded by chromosome, and the –log (P value) for each SNP is shown along the y axis, as generated by Haploview 4.0. All regions containing at least two SNPs with p<10−4 and support for association from neighboring SNPs are indicated. Key: LRRC7 = leucine rich repeat containing 7; GNAQ = guanine nucleotide binding protein; GPR144 = G protein-coupled receptor 144; NRP1 = neuropilin 1; SLITRK6 = slit and trk like 6; GRIA3 = AMPA3 ionotropic glutamate receptor.
Figure 2Details of the association results on chromosome 13 (A) and the X chromosome GRIA3 gene region (B) in the GAIN irritable vs. elated mania case-only analysis, as generated by SNAP 2.0.
The results for the chromosome 4 GABRG1 gene region in the GAIN irritable mania vs. control analysis are shown in (C). Physical position and gene annotations according to HapMap release 22 are shown along the x-axis, and −log (P value) is shown on the left y-axis. The most significant SNP is indicated as a large red diamond, and all other SNPs are colored according to linkage disequilibrium levels (r) with the primary SNP, as calculated from HapMap Release 22 CEU population data, with darker red representing higher values. Recombination rate within the CEU samples is shown on the right y-axis in blue. RefSeq genes are shown with all possible exons and arrows indicating transcript direction.
Figure 3Results of the GAIN irritable vs. elated mania case-only analyses (red), the irritable mania vs. control analyses (blue), and the elated mania vs. control analyses (green) for the chromosome 13q31 region.
The physical position is shown along the x-axis with the –log of the p value for each SNP is shown along the y-axis. The locations of the SLITRK1 and SLITRK6 genes are indicated below, along with a spliced EST.
Summary of the observed frequencies differences of co-morbid disorders between the GAIN and TGEN samples, as well as between the underlying family and bipolar singleton samples.
| GAIN | TGEN | GAIN vs. TGEN | Family | Singleton | Family vs. Singleton | |
| Co-morbid Disorder | Freq | Freq | P Value | Freq | Freq | P Value |
| Alcoholism | 46.3 | 49.0 | 0.218 |
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| Panic Disorder | 23.9 | 27.0 | 0.105 |
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| 74.1 | 76.3 | 0.314 |
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Key: Family refers to bipolar subjects ascertained through the collection of families for NIMH Waves 1–4. Singleton refers to bipolar subjects ascertained as singleton cases collected as part of Wave 5. Note: Significant differences in co-morbidity were not observed between bipolar subjects with irritable vs. elated mania in either sample, nor were differences observed for gender, age at interview, age at onset, age at first mania, or age at most severe mania for any comparison (i.e., irritable vs. elated mania, GAIN vs. TGEN, family vs. singleton, all p>0.10).